View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21062_low_14 (Length: 245)
Name: NF21062_low_14
Description: NF21062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21062_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 31024114 - 31023967
Alignment:
| Q |
30 |
aaagaccaaatatattaataactctaaaccaagtacatgaagtacaatgattagagtaagaaaaagtattaacaatccgcatttgaaagcacattgtaga |
129 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
31024114 |
aaagaccaaatatattaataactctaaaccaagta----atgtacaacgattagagtaagaaaaagtatgaacaatccgcatttgaaagcacattgcaga |
31024019 |
T |
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| Q |
130 |
aaaattcccaaacatacatgcacacatgaaaaatctaacaaataaggcaaaat |
182 |
Q |
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||||| |||| ||||| ||||||||||||||||||||| |||| ||||||||| |
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| T |
31024018 |
aaaatccccacacatatatgcacacatgaaaaatctaataaat-aggcaaaat |
31023967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 28109877 - 28109774
Alignment:
| Q |
1 |
ttatggatattcttctctaannnnnnncaaaagaccaaatatattaataactctaaaccaagtacatgaagtacaatgattagagtaagaaaaagtatta |
100 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28109877 |
ttatggatattcttctctaatttttttctaaagaccaaatatattaataactctaaaccaagtacatgaagtacaatgattagagtaagaaaaagtatta |
28109778 |
T |
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| Q |
101 |
acaa |
104 |
Q |
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|||| |
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| T |
28109777 |
acaa |
28109774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 28109779 - 28109727
Alignment:
| Q |
165 |
taacaaataaggcaaaatagatcttcaataaaaactaaaagccccatgatgtta |
218 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28109779 |
taacaaata-ggcaaaatagatcttcaataaaaactaaaaaccccatgatgtta |
28109727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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