View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21062_low_15 (Length: 228)
Name: NF21062_low_15
Description: NF21062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21062_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 28109857 - 28110048
Alignment:
| Q |
18 |
attagagaagaatatccataatacacgttggactaaactcaattttaaaactagcataagaccttgatgtaatcaatcacaagtagttgagcatatgctt |
117 |
Q |
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| T |
28109857 |
attagagaagaatatccataatacacgttggactaaactcaattttaaaactagcataagaccttgatgtaatc----acaagtagttgagtatatgctt |
28109952 |
T |
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| Q |
118 |
tttaatcatgcttatctaccttttaaaatataaataagtatagtccaaagtgtagttcctaacttcagttaaacttaatcaacaagaggaagaatg |
213 |
Q |
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| T |
28109953 |
tttaatcatgcttatctaccttttaaaatataaataagtatagtccaaagtgtagttcctaacttcagttaaacttaatcaacaagaggaagaatg |
28110048 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 10592301 - 10592371
Alignment:
| Q |
99 |
agtagttgagcatatgctttttaatcatgcttatctaccttttaaaatataaataagtatagtccaaagtgt |
170 |
Q |
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| T |
10592301 |
agtagttaagtataagctttttaatcaagcttatcgaccttt-aaaatatataaaagtatagtccaaagtgt |
10592371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 31024122 - 31024163
Alignment:
| Q |
18 |
attagagaagaatatccataatacacgttggactaaactcaa |
59 |
Q |
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| T |
31024122 |
attagagaagaatatccataatacacattggtctaaactcaa |
31024163 |
T |
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