View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21062_low_2 (Length: 501)
Name: NF21062_low_2
Description: NF21062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21062_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Original strand, 2562624 - 2563093
Alignment:
| Q |
19 |
taacaaggcaaggaaatctgtttagagcctgcataattggatacattcaaatgaatattgtgacatacaagattgtttactttgtgcaaaagaatatatt |
118 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
2562624 |
taacaaagcaaggaaatctgtttagagcctgcataattggatacattcaaatgaatattgtcacatacaagattgtttcctttgtgcaaaagaatatatt |
2562723 |
T |
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| Q |
119 |
tatatttccttaacaatgttgttaattttacttgttaccaaggaagtgctagacacttaaaagtgagcaattatgtgcaatttttggaaacaacgaaaat |
218 |
Q |
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| T |
2562724 |
tatatttcctaaacaatgttgttaattttacttgctaccaaggaagtgctagacacttaaaagtgagcaattatgtgcaattcttggaaacaactaaaat |
2562823 |
T |
|
| Q |
219 |
accaaaataatttcataatttccaaaaatgcaacataacaagcatttcatc-ttatcttcattacaatgattcataccaaccttttttctagcaagttaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2562824 |
accaaaataatttcataatttccaaaaatgcaacataacaagcatttcatctttatcttcattacaatgattcataccaacctcctttctagcaagttaa |
2562923 |
T |
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| Q |
318 |
aatagaaaatattgccaataaataaagatactaaaataacttaccttatgtatctcgcaaaaacactcgaaac-tgagagtcattttcttgacattagca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2562924 |
aatagaaaatattgccaataaataaagatactaaaataacttaccttatgtatcttgcaaaaacactcgaaacttgagagtcattttcttgacattagca |
2563023 |
T |
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| Q |
417 |
agcaaatgtaaccaaccaatcatgactaattcttctaacggtttattacaaaatctgtagtaaatatttc |
486 |
Q |
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| T |
2563024 |
agcaaatgtaaccaaccaatcatgactaattcttctaacggtttattacaaaatctgtagtgaatatttc |
2563093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 24370540 - 24370502
Alignment:
| Q |
192 |
tgtgcaatttttggaaacaacgaaaataccaaaataatt |
230 |
Q |
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| T |
24370540 |
tgtgcattttttggaaacaatgaaaataccaaaataatt |
24370502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 442
Target Start/End: Complemental strand, 24986541 - 24986496
Alignment:
| Q |
397 |
tcattttcttgacattagcaagcaaatgtaaccaaccaatcatgac |
442 |
Q |
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| T |
24986541 |
tcattatcttaacattagcaagcaattgtaaccaactaatcatgac |
24986496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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