View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21062_low_3 (Length: 496)

Name: NF21062_low_3
Description: NF21062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21062_low_3
NF21062_low_3
[»] chr7 (3 HSPs)
chr7 (1-486)||(1785918-1786409)
chr7 (268-389)||(24840535-24840656)
chr7 (322-393)||(1368326-1368397)
[»] chr2 (4 HSPs)
chr2 (287-397)||(33054026-33054136)
chr2 (285-397)||(31634471-31634583)
chr2 (268-397)||(33051917-33052046)
chr2 (278-397)||(27955768-27955887)
[»] chr1 (5 HSPs)
chr1 (278-397)||(23987957-23988076)
chr1 (268-397)||(28660338-28660467)
chr1 (284-397)||(13443577-13443690)
chr1 (3-183)||(8966285-8966465)
chr1 (222-271)||(23987867-23987916)
[»] chr8 (7 HSPs)
chr8 (268-398)||(5646656-5646786)
chr8 (268-397)||(26375248-26375377)
chr8 (275-397)||(18180301-18180423)
chr8 (278-397)||(23570853-23570972)
chr8 (278-397)||(42890755-42890874)
chr8 (278-397)||(42891283-42891402)
chr8 (147-218)||(22924997-22925068)
[»] chr6 (5 HSPs)
chr6 (268-397)||(8048554-8048683)
chr6 (284-398)||(18717804-18717918)
chr6 (271-352)||(24442701-24442782)
chr6 (322-397)||(14238864-14238939)
chr6 (124-218)||(3537692-3537786)
[»] scaffold0240 (2 HSPs)
scaffold0240 (268-398)||(16385-16515)
scaffold0240 (225-271)||(16308-16354)
[»] chr3 (1 HSPs)
chr3 (308-397)||(43306390-43306479)
[»] chr5 (3 HSPs)
chr5 (412-486)||(21845307-21845381)
chr5 (284-396)||(19496894-19497006)
chr5 (97-218)||(28252759-28252884)
[»] chr4 (1 HSPs)
chr4 (351-392)||(22768374-22768415)


Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Original strand, 1785918 - 1786409
Alignment:
Q  1 agaacactcatcagccctttgctcaccactagacataaacattaagtttcctaaacagaattatcaagttccttttcatgttctgttattaccaagaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1785918 agaacactcatcagccctttgctcaccactagacataaacattaagtttcctaaacagaattatcaagttccttttcatgttctgttattaccaagaaac 1786017  T
Q  101 tagacttattttctcttgggcttttatcaaagtgaaaaacacgggccatagcaatcttatgtgtaccccatgtaaacatcatctcattatctcctccctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1786018 tagacttattttctcttgggcttttatcaaagtgaaaaacacgagccatagcaatcttatgtgtaccccatgtaaacatcatctcattatctcctccctg 1786117  T
Q  201 ataagtaatatcattatctcctccgaacagggaaggggtaccaattctggttattagggttcataataacatacccgtgaatatgatttggaatactatg 300  Q
    |||||||||||||||||||||||||||| ||||||| |||  ||||| ||||||||| |||  |||||||||| || | |||||||||||||||||||||    
T  1786118 ataagtaatatcattatctcctccgaactgggaaggagtataaattccggttattagagttggtaataacata-ccataaatatgatttggaatactatg 1786216  T
Q  301 agcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattgttgcccgttttgttacaacaaagattactctat 400  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||    
T  1786217 agcgcaaatattacaataaactgaaggatgattactacaattttaaaatctctaattcgaaatattgttgcccgttttgttacaacaaagattaccctat 1786316  T
Q  401 gaaatttgact-------cactggatattctttttcccttcccacgaaggctttacaattcctacaatggtatccgggtggcctcttgttcat 486  Q
    |||||||||||       || |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1786317 gaaatttgactatggtgacattggatattcttttttccttcccacgaaggctttataattcctacaatggtatccgggtggcctcttgttcat 1786409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 268 - 389
Target Start/End: Original strand, 24840535 - 24840656
Alignment:
Q  268 aacatacccgtgaatatgatttggaata--ctatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatat 365  Q
    ||||||||||||||| |||||| |||||  ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| |||||  || |    
T  24840535 aacatacccgtgaatctgatttagaatatactatgagcgtaaatattacaaaaaactgaaggatgattactacaagtttaaaatctctaattcg--atgt 24840632  T
Q  366 tgttgcccgttttgttacaacaaa 389  Q
     |||| ||||||| ||||||||||    
T  24840633 cgttgtccgtttttttacaacaaa 24840656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 393
Target Start/End: Original strand, 1368326 - 1368397
Alignment:
Q  322 tgaaggatgattactacaattttaaaatctctgattcgatatattgttgcccgttttgttacaacaaagatt 393  Q
    ||||||||||| | ||| | ||||||||||| |||||||||||| |||| ||||||||||||||||| ||||    
T  1368326 tgaaggatgatcattacgagtttaaaatctccgattcgatatatcgttgtccgttttgttacaacaaggatt 1368397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 287 - 397
Target Start/End: Complemental strand, 33054136 - 33054026
Alignment:
Q  287 tttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattgttgcccgttttgttacaac 386  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||||||| | |||||||||||||||||||||||| |||| |||||||| || |||    
T  33054136 tttggaatactatgagcgtaaatattacaacaagttgaaggatgattactacgagtttaaaatctctgattcgatatatcgttgtccgttttgctataac 33054037  T
Q  387 aaagattactc 397  Q
    |||||||||||    
T  33054036 aaagattactc 33054026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 285 - 397
Target Start/End: Original strand, 31634471 - 31634583
Alignment:
Q  285 gatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattgttgcccgttttgttaca 384  Q
    |||||||||||||||||||| | ||||||||  ||| ||||||||||||||||||| ||| |||||||||||||||||||| |||| || ||||||||||    
T  31634471 gatttggaatactatgagcgtagatattacacaaaattgaaggatgattactacaaatttgaaatctctgattcgatatatcgttgtccattttgttaca 31634570  T
Q  385 acaaagattactc 397  Q
    |||||||||||||    
T  31634571 acaaagattactc 31634583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 268 - 397
Target Start/End: Original strand, 33051917 - 33052046
Alignment:
Q  268 aacatacccgtgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattg 367  Q
    |||||| ||||| || ||||||||||||||||||||| | ||||||||||||  |||| | |||||||||||| |||||||||||||||||||||||| |    
T  33051917 aacatatccgtggatctgatttggaatactatgagcgtagatattacaacaagttgaatgttgattactacaagtttaaaatctctgattcgatatatcg 33052016  T
Q  368 ttgcccgttttgttacaacaaagattactc 397  Q
    ||  || ||||||| |||||||||||||||    
T  33052017 ttatccattttgttgcaacaaagattactc 33052046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 278 - 397
Target Start/End: Complemental strand, 27955887 - 27955768
Alignment:
Q  278 tgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattgttgcccgttt 377  Q
    ||||| ||||||||||||||||||||| | ||||||||  |   ||||||||||||| ||||| ||| ||||||| |||||||||||| |||| ||||||    
T  27955887 tgaatctgatttggaatactatgagcgtagatattacacaaggttgaaggatgattattacaaatttgaaatctccgattcgatatatcgttgtccgttt 27955788  T
Q  378 tgttacaacaaagattactc 397  Q
    ||||||||||||||||||||    
T  27955787 tgttacaacaaagattactc 27955768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 278 - 397
Target Start/End: Original strand, 23987957 - 23988076
Alignment:
Q  278 tgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattgttgcccgttt 377  Q
    ||||| |||| |||||||||||||| | | ||||||||||||  ||||||||||||||||||| |||||||||||| ||||||||||| ||||  |||||    
T  23987957 tgaatctgatctggaatactatgagtgtatatattacaacaagttgaaggatgattactacaagtttaaaatctctaattcgatatatcgttgtacgttt 23988056  T
Q  378 tgttacaacaaagattactc 397  Q
    ||||||||||||||||||||    
T  23988057 tgttacaacaaagattactc 23988076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 268 - 397
Target Start/End: Complemental strand, 28660467 - 28660338
Alignment:
Q  268 aacatacccgtgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattg 367  Q
    |||||||| |||||| |||| |||||||||||||||| | ||||||||| || ||||||||| |||||||||| |||||||||||||||| ||||||| |    
T  28660467 aacatacctgtgaatctgatatggaatactatgagcgtagatattacaaaaagctgaaggataattactacaagtttaaaatctctgatttgatatatcg 28660368  T
Q  368 ttgcccgttttgttacaacaaagattactc 397  Q
    ||| || ||||||| ||||||| |||||||    
T  28660367 ttgtccattttgttgcaacaaaaattactc 28660338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 284 - 397
Target Start/End: Complemental strand, 13443690 - 13443577
Alignment:
Q  284 tgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattgttgcccgttttgttac 383  Q
    |||||||||||| |||||||| | |||||||||||   ||| ||||||||||||||| ||| |||||||||||||||||||| |||| || |||||||||    
T  13443690 tgatttggaatattatgagcgtagatattacaacaggttgacggatgattactacaaatttgaaatctctgattcgatatatcgttgtccattttgttac 13443591  T
Q  384 aacaaagattactc 397  Q
    ||||||||||||||    
T  13443590 aacaaagattactc 13443577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 3 - 183
Target Start/End: Original strand, 8966285 - 8966465
Alignment:
Q  3 aacactcatcagccctttgctcaccactagacataaacattaagtttcctaaacagaattatcaagttccttttcatgttctgttattaccaagaaacta 102  Q
    ||||||||||| |||||||||||||||| |||| || |||| | |||| | |  || || || |||||||||||||| || ||| || |||||  ||| |    
T  8966285 aacactcatcaaccctttgctcaccactggacaaaagcattcaatttctttactagcatcattaagttccttttcattttgtgtcatcaccaaataacca 8966384  T
Q  103 gacttattttctcttgggcttttatcaaagtgaaaaacacgggccatagcaatcttatgtgtaccccatgtaaacatcatc 183  Q
    | ||| ||||||||| |||| ||||||||||| |||| | | |||||||||||||||||||| || |||||||||||||||    
T  8966385 gtcttcttttctcttaggctcttatcaaagtgtaaaataggagccatagcaatcttatgtgtgccacatgtaaacatcatc 8966465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 23987867 - 23987916
Alignment:
Q  222 tccgaacagggaaggggtaccaattctggttattagggttcataataaca 271  Q
    ||||||||| |||||   ||||||||||||||||||||||| ||||||||    
T  23987867 tccgaacagagaaggatgaccaattctggttattagggttcttaataaca 23987916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 268 - 398
Target Start/End: Complemental strand, 5646786 - 5646656
Alignment:
Q  268 aacatacccgtgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattg 367  Q
    |||||||| || ||| ||||||||| ||||||||  | | ||||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||| || |    
T  5646786 aacatacctgtaaatctgatttggagtactatgaatgtagatattacaaaaaattgaaggatgattactacaagtttaaaatctccgattcgatacatcg 5646687  T
Q  368 ttgcccgttttgttacaacaaagattactct 398  Q
    ||| |||||||||||||||||||||||||||    
T  5646686 ttgtccgttttgttacaacaaagattactct 5646656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 268 - 397
Target Start/End: Original strand, 26375248 - 26375377
Alignment:
Q  268 aacatacccgtgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattg 367  Q
    |||||| |||||||| ||||||| ||||||||||||| | ||||||||||||  ||||||||||||||||  | ||||||||||||||||| | ||||      
T  26375248 aacatatccgtgaatctgatttgtaatactatgagcgtagatattacaacaagttgaaggatgattactatgagtttaaaatctctgattcaaaatatca 26375347  T
Q  368 ttgcccgttttgttacaacaaagattactc 397  Q
    ||| ||||||||||||| ||||||||||||    
T  26375348 ttgtccgttttgttacaccaaagattactc 26375377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 275 - 397
Target Start/End: Complemental strand, 18180423 - 18180301
Alignment:
Q  275 ccgtgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattgttgcccg 374  Q
    |||||||| |||||||||||||| |||||  | ||||||||||||  ||||||||||||||||| | ||||||||||| |||| || |||| |||| |||    
T  18180423 ccgtgaatctgatttggaatactgtgagcatagatattacaacaagttgaaggatgattactacgagtttaaaatctccgatttgaaatatcgttgtccg 18180324  T
Q  375 ttttgttacaacaaagattactc 397  Q
    ||||||||||||||| |||||||    
T  18180323 ttttgttacaacaaatattactc 18180301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 397
Target Start/End: Original strand, 23570853 - 23570972
Alignment:
Q  278 tgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattgttgcccgttt 377  Q
    ||||| ||||||||||||||||||||| | ||||||||  |   ||||||||||||||||||| ||| ||||||| ||||| |||||| |||| ||||||    
T  23570853 tgaatctgatttggaatactatgagcgtagatattacacaaggttgaaggatgattactacaaatttgaaatctccgattcaatatatcgttgtccgttt 23570952  T
Q  378 tgttacaacaaagattactc 397  Q
    ||||||| ||||||||||||    
T  23570953 tgttacagcaaagattactc 23570972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 397
Target Start/End: Original strand, 42890755 - 42890874
Alignment:
Q  278 tgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattgttgcccgttt 377  Q
    ||||| |||||||||||| |||||||| | ||||||||||||  ||| ||||||||||||| |  || ||||||| |||||| ||||| |||| ||||||    
T  42890755 tgaatctgatttggaatattatgagcgtagatattacaacaagttgacggatgattactacgagattgaaatctccgattcggtatatcgttgtccgttt 42890854  T
Q  378 tgttacaacaaagattactc 397  Q
    ||||||||||||||||||||    
T  42890855 tgttacaacaaagattactc 42890874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 278 - 397
Target Start/End: Complemental strand, 42891402 - 42891283
Alignment:
Q  278 tgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattgttgcccgttt 377  Q
    ||||| |||||||||||| |||||| | | ||||||||||||  ||| ||||||||||||| |  || ||||||| |||||| ||||| |||| ||||||    
T  42891402 tgaatctgatttggaatattatgagtgtagatattacaacaagttgacggatgattactacgagattgaaatctccgattcggtatatcgttgtccgttt 42891303  T
Q  378 tgttacaacaaagattactc 397  Q
    ||||||||||||||||||||    
T  42891302 tgttacaacaaagattactc 42891283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 22924997 - 22925068
Alignment:
Q  147 catagcaatcttatgtgtaccccatgtaaacatcatctcattatctcctccctcataagtaatatcattatc 218  Q
    ||||||||||||||| || ||||| ||||||| |||| ||||||| | ||| | ||||||||||||||||||    
T  22924997 catagcaatcttatgagttccccaagtaaacaacatcacattatcccgtccttgataagtaatatcattatc 22925068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 268 - 397
Target Start/End: Complemental strand, 8048683 - 8048554
Alignment:
Q  268 aacatacccgtgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattg 367  Q
    |||||||| |||||| ||||||||||||||||||||| | ||||||||||||| ||  ||||||||||||||| |||||||||||  | | ||||||| |    
T  8048683 aacatacctgtgaatctgatttggaatactatgagcgtagatattacaacaaattgccggatgattactacaagtttaaaatctccaaattgatatatcg 8048584  T
Q  368 ttgcccgttttgttacaacaaagattactc 397  Q
    |||  |||||||||||||||||||||||||    
T  8048583 ttgttcgttttgttacaacaaagattactc 8048554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 284 - 398
Target Start/End: Complemental strand, 18717918 - 18717804
Alignment:
Q  284 tgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattgttgcccgttttgttac 383  Q
    ||||||||||||||||||||  | ||| ||||   |  |||||||||||| |||||| ||| ||||||| ||||| |||||| |||| ||||||||||||    
T  18717918 tgatttggaatactatgagcatagatagtacacatagttgaaggatgatttctacaaatttgaaatctccgattccatatatcgttgtccgttttgttac 18717819  T
Q  384 aacaaagattactct 398  Q
    |||||||||||||||    
T  18717818 aacaaagattactct 18717804  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 352
Target Start/End: Complemental strand, 24442782 - 24442701
Alignment:
Q  271 atacccgtgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctc 352  Q
    |||||| ||||| ||||||||||||||||||||| | |||||||||||   ||||||||||||||||||| |||||||||||    
T  24442782 atacccatgaatctgatttggaatactatgagcgtagatattacaacatgttgaaggatgattactacaagtttaaaatctc 24442701  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 322 - 397
Target Start/End: Original strand, 14238864 - 14238939
Alignment:
Q  322 tgaaggatgattactacaattttaaaatctctgattcgatatattgttgcccgttttgttacaacaaagattactc 397  Q
    ||||||||||||||||| | |||||||||||||||||||||||| |||| ||||||  | ||||||||||||||||    
T  14238864 tgaaggatgattactactagtttaaaatctctgattcgatatatcgttgtccgtttcttgacaacaaagattactc 14238939  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 3537786 - 3537692
Alignment:
Q  124 ttatcaaagtgaaaaacacgggccatagcaatcttatgtgtaccccatgtaaacatcatctcattatctcctccctcataagtaatatcattatc 218  Q
    |||||||| || |||||| | | ||||||||||||||  || ||||| ||||||| |||| ||||||| | ||||  ||||||||||||||||||    
T  3537786 ttatcaaattgtaaaacaggtgtcatagcaatcttataagttccccaagtaaacaacatcacattatcccgtccccgataagtaatatcattatc 3537692  T

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Target: scaffold0240 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 268 - 398
Target Start/End: Original strand, 16385 - 16515
Alignment:
Q  268 aacatacccgtgaatatgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattg 367  Q
    ||||||||||||||| |||||| | | | |||||||  | | ||||||| | ||||||||||||||||||||| ||||||||||  ||||||||||||||    
T  16385 aacatacccgtgaatctgatttagtagagtatgagcatagacattacaaaacactgaaggatgattactacaagtttaaaatcttagattcgatatattg 16484  T
Q  368 ttgcccgttttgttacaacaaagattactct 398  Q
    ||| || ||||||||||||||||||||||||    
T  16485 ttgtccattttgttacaacaaagattactct 16515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 16308 - 16354
Alignment:
Q  225 gaacagggaaggggtaccaattctggttattagggttcataataaca 271  Q
    |||||||||||| ||||||||| |||||||||||| |||||||||||    
T  16308 gaacagggaaggagtaccaattttggttattagggctcataataaca 16354  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 397
Target Start/End: Complemental strand, 43306479 - 43306390
Alignment:
Q  308 atattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattgttgcccgttttgttacaacaaagattactc 397  Q
    ||||||||||||  ||| ||||||||||||| |  || |||||||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  43306479 atattacaacaagttgacggatgattactacgagattgaaatctctgattcggtatatcgttgtccgttttgttacaacaaagattactc 43306390  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 412 - 486
Target Start/End: Complemental strand, 21845381 - 21845307
Alignment:
Q  412 cactggatattctttttcccttcccacgaaggctttacaattcctacaatggtatccgggtggcctcttgttcat 486  Q
    ||||||||||||||||  ||||||||||||| |||||||||||| ||||||| ||||||||||  ||||||||||    
T  21845381 cactggatattcttttctccttcccacgaagactttacaattccaacaatgggatccgggtggtttcttgttcat 21845307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 396
Target Start/End: Complemental strand, 19497006 - 19496894
Alignment:
Q  284 tgatttggaatactatgagcgcaaatattacaacaaactgaaggatgattactacaattttaaaatctctgattcgatatattgttgcccgttttgttac 383  Q
    |||||||||||||||||| || |  ||||| || ||| |||||||||||||| || | ||||||||||  ||||||| |||| | || | ||||||||||    
T  19497006 tgatttggaatactatgaacgtaggtattaaaataaattgaaggatgattacaacgagtttaaaatctacgattcgaaatatcgctgtctgttttgttac 19496907  T
Q  384 aacaaagattact 396  Q
    |||||||||||||    
T  19496906 aacaaagattact 19496894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 28252759 - 28252884
Alignment:
Q  97 aaactagacttattttctcttgggcttttatcaaagtgaaaaacacgggccatagcaatctta--tgtgtaccccatgtaaacatcatctcattatctc- 193  Q
    ||||||| ||| |||||||||||||| ||||||||||| ||||||   | ||||| |||||||  |||||  |||||||||||||||||   |||||||     
T  28252759 aaactagtcttcttttctcttgggctcttatcaaagtgtaaaacataaggcatagaaatcttatgtgtgtgtcccatgtaaacatcatcatgttatctcg 28252858  T
Q  194 -ctccctcataagtaatatcattatc 218  Q
     |||||  | ||||||||||||||||    
T  28252859 tctccccaacaagtaatatcattatc 28252884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 22768415 - 22768374
Alignment:
Q  351 tctgattcgatatattgttgcccgttttgttacaacaaagat 392  Q
    |||||||| |||||| |||| |||||||||||||||||||||    
T  22768415 tctgattcaatatatcgttgtccgttttgttacaacaaagat 22768374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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