View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21062_low_7 (Length: 405)
Name: NF21062_low_7
Description: NF21062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21062_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 32746853 - 32747063
Alignment:
| Q |
1 |
atattcaagagacttgagactagtgatgaaagatggaatatttccaacaaaattattggaggataaatcaagtactcggaggtttgtcaagttgctaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32746853 |
atattcaagagacttgagactagtgatgaaagatggaatatttccaacaaaattattggaggataaatcaagtacttggaggtttgtcaagttgctaagg |
32746952 |
T |
|
| Q |
101 |
caatgtggaaaatcaccactcattctatttctgctgaggtcaagttcctgtaaattcttcatttcacagagatctgccaatattttttgttttcagtgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32746953 |
caatgtggaaaatcaccactcattctatttctgctgaggtcaagttcctgtaaattcttcatttcacagagacctgccaatattttttgttttcagtgct |
32747052 |
T |
|
| Q |
201 |
acttaatgctt |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
32747053 |
acttaatgctt |
32747063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 4913842 - 4914040
Alignment:
| Q |
1 |
atattcaagagacttgagactagtgatgaaagatggaatatttccaacaaaattattggaggataaatcaagtactcggaggtttgtcaagttgctaagg |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| |||||||||| |||||| |
|
|
| T |
4913842 |
atattcaagagacttgagactaatgatgaaagatggaatgtttccaacaaaattatttgaggataaatcaagtactctgaggcttgtcaagtttctaagg |
4913941 |
T |
|
| Q |
101 |
caatgtggaaaatcaccactcattctatttctgctgaggtcaagttcctgtaaattcttcatttcacagagatctgccaatatt-ttttgttttcagtg |
198 |
Q |
| |
|
|| || ||||||| ||||||||||| |||||||||||||||||||||||| | |||||||||| |||| | ||| ||||||| |||||||||||||| |
|
|
| T |
4913942 |
cattgaggaaaataaccactcattccatttctgctgaggtcaagttcctgcagattcttcattccacataatcctgtcaatattattttgttttcagtg |
4914040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University