View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21062_low_9 (Length: 397)

Name: NF21062_low_9
Description: NF21062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21062_low_9
NF21062_low_9
[»] chr6 (11 HSPs)
chr6 (1-379)||(1182258-1182636)
chr6 (8-207)||(1237134-1237332)
chr6 (183-338)||(896466-896621)
chr6 (8-129)||(897197-897319)
chr6 (73-204)||(1193411-1193542)
chr6 (173-248)||(897123-897197)
chr6 (203-379)||(1237368-1237547)
chr6 (294-337)||(793865-793908)
chr6 (225-338)||(1193246-1193367)
chr6 (59-98)||(1183394-1183433)
chr6 (307-379)||(897037-897106)
[»] chr4 (3 HSPs)
chr4 (73-137)||(12857196-12857260)
chr4 (289-338)||(10203834-10203883)
chr4 (53-104)||(12857477-12857529)
[»] scaffold0302 (1 HSPs)
scaffold0302 (73-137)||(19733-19797)
[»] chr7 (1 HSPs)
chr7 (86-137)||(20257183-20257234)


Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 1182636 - 1182258
Alignment:
Q  1 attggcaatgacaacttctgataaatcctattccctctcttacgaaaacgctccaaacaattgaaagaaaaacactcattacctaataacacaccagaac 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182636 attggcaatgacaacttctgataaatcctattccccctcttacgaaaacgctccaaacaattgaaagaaaaacactcattacctaataacacaccagaac 1182537  T
Q  101 actaacaataccaaatcttaggcctaaaaacactcatcacctagtaatactaacatgacgacctaaaaggatatcaaggactccattatctgatccaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182536 actaacaataccaaatcttaggcctaaaaacactcatcacctagtaatactaacatgacgacctaaaaggatatcaaggactccattatctgatccaaaa 1182437  T
Q  201 ccccatttgtactcaatatgcaataacaatatcctaagtattcaatataccatatatcaataaatctcatcacaagtataatccttattagaaagcactt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  1182436 ccccatttgtactcaatatgcaataacaatatcctaagtattcaatataccatatatcaataaatctcatcacaagtataatacttattagagagcactt 1182337  T
Q  301 atcactttatcacattttcttaaccacatattcattagtagagagcaagtnnnnnnnttcttagaaaccatatacatcc 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  1182336 atcactttatcacattttcttaaccacatattcattagtagagagcaagtaaaaaaattcttagaaaccatatacatcc 1182258  T

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Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 1237134 - 1237332
Alignment:
Q  8 atgacaacttctgataaatcctattccctctcttacgaaaacgctccaaacaattgaaagaaaaacactcattacctaataacacaccagaacactaaca 107  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||  |||||||||||||||||||| ||||||||| |||||||| ||||| ||    
T  1237134 atgacaacttctgataaatcctatcccc-ctcttacgaaaacgctccaaaagattgaaagaaaaacactcatcacctaataaaacaccagagcactacca 1237232  T
Q  108 ataccaaatcttaggcctaaaaacactcatcacctagtaatactaacatgacgacctaaaaggatatcaaggactccattatctgatccaaaaccccatt 207  Q
    ||| |||||||||||| |||||||||||| ||||||||||| |||||||  | ||||| | |||||||||||||||||| ||||||||||||||||||||    
T  1237233 ataacaaatcttaggcataaaaacactcaccacctagtaattctaacatagctacctatagggatatcaaggactccatcatctgatccaaaaccccatt 1237332  T

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Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 183 - 338
Target Start/End: Complemental strand, 896621 - 896466
Alignment:
Q  183 ccattatctgatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaatataccatatatcaataaatctcatcacaagtataat 282  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  896621 ccatcatctcatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaatctaccctatatcaataaatctcatcacaagtataat 896522  T
Q  283 ccttattagaaagcacttatcactttatcacattttcttaaccacatattcattag 338  Q
     || |||||| | |||||||||||||||| |||||||||||||| ||| |||||||    
T  896521 actcattagagaacacttatcactttatctcattttcttaaccaaatactcattag 896466  T

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Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 897319 - 897197
Alignment:
Q  8 atgacaacttctgataaatcctattccctc-tcttacgaaaacgctccaaacaattgaaagaaaaacactcattacctaataacacaccagaacactaac 106  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |    
T  897319 atgacaacttctgataaatcctattcccccctcttacgaaaacgctccaaacaattgaaagaaaaacactcatcacctaataacacaccagagcactacc 897220  T
Q  107 aataccaaatcttaggcctaaaa 129  Q
    |||| ||||||||||||||||||    
T  897219 aataacaaatcttaggcctaaaa 897197  T

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Target: chr6; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 1193542 - 1193411
Alignment:
Q  73 cactcattacctaataacacaccagaacactaacaataccaaatcttaggcctaaaaacactcatcacctagtaatactaacatgacgacctaaaaggat 172  Q
    ||||||| ||||||||||||||||||| |||| | ||| ||||||||||||||||||||| |||| |||||||||||||||||| || ||||| ||||||    
T  1193542 cactcatcacctaataacacaccagaatactacctataacaaatcttaggcctaaaaacattcataacctagtaatactaacataactacctataaggat 1193443  T
Q  173 atcaaggactccattatctgatccaaaacccc 204  Q
    ||||| |||||||| |||||||||||||||||    
T  1193442 atcaatgactccatcatctgatccaaaacccc 1193411  T

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Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 897197 - 897123
Alignment:
Q  173 atcaaggactccattatctgatccaaaaccccatttgtactcaatatgcaataacaatatcctaagtattcaatat 248  Q
    |||||||||||||  |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  897197 atcaaggactccagcatctcatccaaaaccccatttgtactcaatatgcaataac-atatcctaagtattcaatat 897123  T

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Target: chr6; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 203 - 379
Target Start/End: Original strand, 1237368 - 1237547
Alignment:
Q  203 ccatttgtactcaatatgcaataacaatatcctaagtattcaatataccatatatcaataaatctcatcacaagtata--------atccttattagaaa 294  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||  |||| ||||| |||||||| ||||||||||        || || |||||| |    
T  1237368 ccatttgaactcaatatgcaataacaatatcctaagtactcaatatgtcatacatcaacaaatctcaacacaagtataataatcatatactcattagaga 1237467  T
Q  295 gcacttatcactttatcacattttcttaaccacatattcattagtagagagcaagtnnnnnnnttcttagaaaccatatacatcc 379  Q
    | || ||||||  ||||||||||||||||||||||| ||||   ||||| ||||||       ||||||||||||||||||||||    
T  1237468 gaacctatcac--tatcacattttcttaaccacatactcat---tagagtgcaagtaaaataattcttagaaaccatatacatcc 1237547  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 337
Target Start/End: Original strand, 793865 - 793908
Alignment:
Q  294 agcacttatcactttatcacattttcttaaccacatattcatta 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  793865 agcacttatcactttatcacattttcttaaccacatattcatta 793908  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 338
Target Start/End: Complemental strand, 1193367 - 1193246
Alignment:
Q  225 aacaatatcctaagtattcaatataccatatatcaataaatctcatcacaagtata--------atccttattagaaagcacttatcactttatcacatt 316  Q
    |||||||||||||||| ||||||| ||||| ||||| |||||| |  |||||||||        || || |  ||| ||||||||||| || ||||||||    
T  1193367 aacaatatcctaagtactcaatatgccatacatcaacaaatctaaatacaagtataataatcatatactcacaagagagcacttatcatttcatcacatt 1193268  T
Q  317 ttcttaaccacatattcattag 338  Q
    |||||||||||||| |||||||    
T  1193267 ttcttaaccacatactcattag 1193246  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 1183433 - 1183394
Alignment:
Q  59 aattgaaagaaaaacactcattacctaataacacaccaga 98  Q
    |||||||||||||||||| || ||||||||||||||||||    
T  1183433 aattgaaagaaaaacacttatcacctaataacacaccaga 1183394  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 897106 - 897037
Alignment:
Q  307 ttatcacattttcttaaccacatattcattagtagagagcaagtnnnnnnnttcttagaaaccatatacatcc 379  Q
    |||||||||||||||||||||||| |||||||   |||||||||       |||| |||||||||||||||||    
T  897106 ttatcacattttcttaaccacatactcattag---agagcaagtaaaaaatttctaagaaaccatatacatcc 897037  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 12857260 - 12857196
Alignment:
Q  73 cactcattacctaataacacaccagaacactaacaataccaaatcttaggcctaaaaacactcat 137  Q
    ||||||| |||||||||||||||||||||||| | ||| ||||||||||||||||||||| ||||    
T  12857260 cactcatcacctaataacacaccagaacactacctataacaaatcttaggcctaaaaacattcat 12857196  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 10203883 - 10203834
Alignment:
Q  289 tagaaagcacttatcactttatcacattttcttaaccacatattcattag 338  Q
    |||| |||||||||||||| |||||||||| ||||||||||| |||||||    
T  10203883 tagagagcacttatcacttcatcacatttttttaaccacatactcattag 10203834  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 12857529 - 12857477
Alignment:
Q  53 ccaaacaattgaaagaaaa-acactcattacctaataacacaccagaacacta 104  Q
    ||||||||||||||||||| |||||||| |||||| ||||||| ||| |||||    
T  12857529 ccaaacaattgaaagaaaagacactcataacctaagaacacacaagatcacta 12857477  T

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Target: scaffold0302 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 19797 - 19733
Alignment:
Q  73 cactcattacctaataacacaccagaacactaacaataccaaatcttaggcctaaaaacactcat 137  Q
    ||||||| |||||||||||||||||||||||| | ||| ||||||||||| ||||||||| ||||    
T  19797 cactcatcacctaataacacaccagaacactacctataacaaatcttaggtctaaaaacattcat 19733  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 20257183 - 20257234
Alignment:
Q  86 ataacacaccagaacactaacaataccaaatcttaggcctaaaaacactcat 137  Q
    ||||||||| ||||||||| | ||| ||||||||||||||||||||| ||||    
T  20257183 ataacacactagaacactacctataacaaatcttaggcctaaaaacattcat 20257234  T

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