View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21063_high_2 (Length: 1047)

Name: NF21063_high_2
Description: NF21063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21063_high_2
NF21063_high_2
[»] chr6 (32 HSPs)
chr6 (688-1047)||(31564478-31564843)
chr6 (343-629)||(31564838-31565117)
chr6 (1-211)||(31565162-31565372)
chr6 (276-540)||(33414524-33414788)
chr6 (45-211)||(33414293-33414459)
chr6 (543-909)||(33385314-33385670)
chr6 (543-909)||(33259583-33259959)
chr6 (276-515)||(33269497-33269740)
chr6 (276-540)||(33395008-33395274)
chr6 (313-540)||(33258187-33258416)
chr6 (55-211)||(33383760-33383916)
chr6 (276-447)||(33383981-33384156)
chr6 (543-735)||(33416152-33416345)
chr6 (55-186)||(33351400-33351530)
chr6 (370-542)||(33278972-33279139)
chr6 (543-728)||(24631975-24632161)
chr6 (101-211)||(33292802-33292912)
chr6 (436-540)||(33293090-33293194)
chr6 (946-1047)||(33416366-33416469)
chr6 (69-172)||(33258067-33258170)
chr6 (287-377)||(33292988-33293078)
chr6 (135-207)||(33269355-33269427)
chr6 (587-769)||(9165228-9165418)
chr6 (373-497)||(33280358-33280482)
chr6 (780-886)||(24631864-24631970)
chr6 (698-772)||(29274300-29274376)
chr6 (145-185)||(31567428-31567468)
chr6 (494-540)||(28873045-28873091)
chr6 (803-878)||(281808-281881)
chr6 (588-629)||(33282241-33282282)
chr6 (588-629)||(33398042-33398083)
chr6 (588-629)||(33408952-33408993)
[»] chr2 (8 HSPs)
chr2 (319-540)||(17447760-17447982)
chr2 (45-211)||(17445747-17445910)
chr2 (276-348)||(17445607-17445679)
chr2 (844-909)||(17443537-17443602)
chr2 (691-772)||(34339039-34339122)
chr2 (699-739)||(3102617-3102657)
chr2 (804-881)||(14299588-14299663)
chr2 (711-772)||(7103554-7103615)
[»] scaffold0428 (7 HSPs)
scaffold0428 (313-540)||(2308-2537)
scaffold0428 (673-909)||(3802-4047)
scaffold0428 (370-542)||(15114-15281)
scaffold0428 (69-172)||(2188-2291)
scaffold0428 (373-497)||(13771-13895)
scaffold0428 (543-629)||(3704-3791)
scaffold0428 (588-629)||(11970-12011)
[»] chr5 (7 HSPs)
chr5 (947-1032)||(30653275-30653360)
chr5 (698-820)||(11684346-11684468)
chr5 (774-839)||(30653373-30653438)
chr5 (691-772)||(32059660-32059742)
chr5 (691-735)||(10391269-10391313)
chr5 (828-879)||(11457158-11457209)
chr5 (691-730)||(29115328-29115367)
[»] chr8 (8 HSPs)
chr8 (803-881)||(13000381-13000457)
chr8 (696-764)||(26717178-26717246)
chr8 (700-786)||(5290566-5290649)
chr8 (691-754)||(26716527-26716590)
chr8 (803-881)||(30191098-30191174)
chr8 (738-824)||(10079082-10079168)
chr8 (775-824)||(30389108-30389157)
chr8 (698-772)||(34788498-34788574)
[»] chr3 (6 HSPs)
chr3 (803-879)||(43115093-43115167)
chr3 (691-769)||(38462197-38462277)
chr3 (698-771)||(22232749-22232824)
chr3 (682-764)||(3015928-3016011)
chr3 (803-881)||(37273171-37273247)
chr3 (806-902)||(24624250-24624344)
[»] chr7 (4 HSPs)
chr7 (766-879)||(3468614-3468725)
chr7 (691-772)||(3610811-3610894)
chr7 (699-820)||(26935573-26935696)
chr7 (657-735)||(22388014-22388093)
[»] chr1 (2 HSPs)
chr1 (701-754)||(44207697-44207750)
chr1 (830-881)||(15581316-15581367)
[»] scaffold0024 (1 HSPs)
scaffold0024 (713-786)||(21335-21410)
[»] chr4 (3 HSPs)
chr4 (700-754)||(32920489-32920543)
chr4 (697-764)||(47970240-47970309)
chr4 (714-784)||(55437345-55437415)


Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-167; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-167
Query Start/End: Original strand, 688 - 1047
Target Start/End: Complemental strand, 31564843 - 31564478
Alignment:
Q  688 aagataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagctt 787  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  31564843 aagataaacacttatcataaaattgcatatgtataagctatttttataacaagataaaatgaagtcacactgttttcctacaagtgattttcataagctt 31564744  T
Q  788 ttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 887  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31564743 ttctagacaacatatggaaataagctgaaaacaacttttgtggacatgtcattagttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 31564644  T
Q  888 actgtataagttcaaatacatcaatccacaagaggcaaaacaatatgagaagatgggcaaaatggaagtataattcattttttctctttt------acat 981  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||      ||||    
T  31564643 agtgtataagttcaaatatatcaatccacaagaggcaaaacaatatgaaaagatgggcaaaatggaagtataattaattttttctcttttacatttacat 31564544  T
Q  982 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaa 1047  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564543 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaa 31564478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 343 - 629
Target Start/End: Complemental strand, 31565117 - 31564838
Alignment:
Q  343 tgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgt 442  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  443 gaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 542  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565017 gaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 31564918  T
Q  543 caagtgttggtgatatagttgctgcaattcaaaggggacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagata 629  Q
     ||||||||||       |||||||||| ||||||||   ||||||||||||||||| || ||| |||||||||||||| |||||||    
T  31564917 taagtgttggt-------ttgctgcaatccaaagggggtggaatagacatttaaaaaatagaaatcttatgtaagaatttaaagata 31564838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 31565372 - 31565162
Alignment:
Q  1 aaaatgcaacaaatacttttcttgaaaactttttaagctataattgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31565372 aaaatgcaacaaatacttttcttgaaaactttttaagctataattgtttctccaagagtgaaccgaacaaaacgccgcacattaatgttctcgccaatgg 31565273  T
Q  101 cagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565272 cagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattct 31565173  T
Q  201 tccctcaacaa 211  Q
    |||||||||||    
T  31565172 tccctcaacaa 31565162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 276 - 540
Target Start/End: Original strand, 33414524 - 33414788
Alignment:
Q  276 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 375  Q
    |||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  33414524 cttcgtcacaatagtttcgggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaat 33414623  T
Q  376 ttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactc 475  Q
    ||||||||||| || | ||||||||||||||| ||||||||||||||||||| |||  ||| |||||||||||||||| ||||||||||||||||  ||     
T  33414624 ttctcacttctgccaacaaagtccgtttcacagttcacttcaattagaacaccaatacgtgcatcgtgaatgtatgtaccgattcttccttcagctgcta 33414723  T
Q  476 gtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 540  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  33414724 gtcttccggatttcttatcagcggatgagagaccctttttcctgagatatgcttgcgccttttca 33414788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 45 - 211
Target Start/End: Original strand, 33414293 - 33414459
Alignment:
Q  45 tgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtca 144  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  33414293 tgtttctccgagagtgaaccgaacaaaacgccgcactttaatgttctctccaatagcagctatactttgcctcaccaagtctttcactacaacactgtca 33414392  T
Q  145 tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 211  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  33414393 tccttaataaaaggctgctctagaagagcaagctctcctaacctctttgagattcttccctcgacaa 33414459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 543 - 909
Target Start/End: Original strand, 33385314 - 33385670
Alignment:
Q  543 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 641  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| ||||||||||  |||| ||| ||||||||||||||||||||||||||||||||||    
T  33385314 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacgattagaaatcttatgtaagaattcaaagataggtgaacaggct 33385413  T
Q  642 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-- 739  Q
     |||| ||||||           |||| | |||||| ||| |||| ||||||| |||||  |||| || |||| |||||||||| ||||||||| |||      
T  33385414 ggaaacctaaga-----------taaacagcctaatgaaaacttataagataagcactttacatataagtgctgatgtataagcaatttttataacaaaa 33385502  T
Q  740 gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 839  Q
    |||||||||||||||||||  | | |||||||| |||||||||||||||||||||||   || ||||| |||||||||||||||||| ||||||||||||    
T  33385503 gataaaatgaagtcatact--tatgctataagctattttcataagcttttctagacagtttatggaaaaaagctgaaaacaacttttatggacatgtcat 33385600  T
Q  840 tggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 909  Q
      | ||||||||| |||||||| ||||||| ||||||||||| |||| | |  |||||||||||| ||||    
T  33385601 gagctgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttcaaatgcatc 33385670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 543 - 909
Target Start/End: Original strand, 33259583 - 33259959
Alignment:
Q  543 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 641  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| |||||||||||||||||||||| || |  |||||    
T  33259583 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagatatgtaagaaggct 33259682  T
Q  642 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagc--aa 739  Q
     |||| ||||||| | ||||||||||| | ||||||| ||||||| |||||||   |||  |||| || ||||||||||||||||||||||||| |  ||    
T  33259683 ggaaacctaagaccttgtttggataaacagcctaattcaagcttataagataagagctttacatataagtgcttatgtataagctatttttataacaaaa 33259782  T
Q  740 gataaaatgaagtcatactgttttc-------ctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggac 832  Q
    |||||| ||||||||||||||||||       |||||||| ||||||||||||||||||| |||  ||| | |||   |||||||||| ||||| |||||    
T  33259783 gataaattgaagtcatactgttttcctatatgctataagctattttcataagcttttctatacagtatatgtaaaatggctgaaaacagcttttatggac 33259882  T
Q  833 atgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 909  Q
    |||||||| |  |||||||| |||||||| ||||||| |  |||||||| |||| | | ||||||||||||||||||    
T  33259883 atgtcattagccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataagttcaaatacatc 33259959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 276 - 515
Target Start/End: Original strand, 33269497 - 33269740
Alignment:
Q  276 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 375  Q
    |||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  33269497 cttcgtcacaatagtttcgggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaat 33269596  T
Q  376 ttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatg----tatgtagcgattcttccttcagca 471  Q
    ||||||||||| || | |||||| |||||||| |||||||||||||||||||  |||  || || |||||||    |||||| |||||||| |||||||     
T  33269597 ttctcacttctgccaacaaagtcggtttcacagttcacttcaattagaacaccgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagct 33269696  T
Q  472 actcgtcttccggatttcttgtcagcggatgagagacccttttt 515  Q
     || ||||| | || ||||| |||||||||||||||||||||||    
T  33269697 gctagtcttgcagacttcttatcagcggatgagagacccttttt 33269740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 276 - 540
Target Start/End: Original strand, 33395008 - 33395274
Alignment:
Q  276 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 375  Q
    ||||||| || |||||| | ||||| |||||||||||||||||||||||||||||||||||||   |||||||| |||||||  ||| ||||||||||||    
T  33395008 cttcgtcgcaatggtttcaagaataccttcaatagatacaaactgaacctgtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaat 33395107  T
Q  376 ttctcacttcta--ccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaac 473  Q
     | ||||||||   || | |||||| |||||||| ||||||||||| ||||||   ||| ||| ||||| ||||||| || ||||||||||||||||  |    
T  33395108 ctatcacttctgtgccaacaaagtcggtttcacagttcacttcaatcagaacatagatgcgtgcatcgtcaatgtatttaccgattcttccttcagctgc 33395207  T
Q  474 tcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 540  Q
    | | || ||||||||||||||||| ||||||||||||||| |||| ||||||| ||| |||||||||    
T  33395208 tagcctaccggatttcttgtcagctgatgagagaccctttgttctaaggtatgattgggccttttca 33395274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 313 - 540
Target Start/End: Original strand, 33258187 - 33258416
Alignment:
Q  313 acaaactgaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttc 411  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  |||    
T  33258187 acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttc 33258286  T
Q  412 acttcaattagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccc 510  Q
    |||||||||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| ||||||||||||||||||    
T  33258287 acttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccc 33258386  T
Q  511 ttttttctgaggtatgcttgcgccttttca 540  Q
    |||||  |||| |||||||||| |||||||    
T  33258387 tttttgatgagatatgcttgcggcttttca 33258416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 55 - 211
Target Start/End: Original strand, 33383760 - 33383916
Alignment:
Q  55 agagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatga 154  Q
    ||||||||||||||||||||||   |  |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  33383760 agagtgaaccgaacaaaacgcccagctttaatgttctcgccaatggcagctatactttgcctcaccaagtctttcactgaaacactgtcatccttaatga 33383859  T
Q  155 aaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 211  Q
    ||||||||| || |||||| || |||  ||| |||||||||||||||||||||||||    
T  33383860 aaggctgctttataagagcgagatctggtaacctctttgagattcttccctcaacaa 33383916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 276 - 447
Target Start/End: Original strand, 33383981 - 33384156
Alignment:
Q  276 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagca----gcaacttgcattgcaagatcatgaacaaactcctt 371  Q
    |||||||||| |||||| | |||||||||||| ||||||||||||||||| ||||||||||    || ||||||||||||||||||| ||| ||||||||    
T  33383981 cttcgtcacaatggtttcaagaatatcttcaacagatacaaactgaacctctggacaagcaagcagccacttgcattgcaagatcatcaaccaactcctt 33384080  T
Q  372 gaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatg 447  Q
     | |||||||||||| |||| |||||| |||| ||| |||||||||||||||||||  |||||||||| |||||||    
T  33384081 aattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccgatgtgtgaatagtgaatg 33384156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 543 - 735
Target Start/End: Original strand, 33416152 - 33416345
Alignment:
Q  543 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 641  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| ||||| ||  ||||  ||| ||||||||||||||||||||| ||    
T  33416152 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaattagaagtcttaactaaaaattcaaagataggtgaacagact 33416251  T
Q  642 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 735  Q
    ||||||| | ||| | ||||||||||| ||||||||||||||||| ||||||| | || || || ||| |||||||||||||||||||||||||    
T  33416252 agaaaaccatgaccttgtttggataaacaacctaattaaagcttataagataagcgctcattatcaaagtgcttatgtataagctatttttata 33416345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 33351400 - 33351530
Alignment:
Q  55 agagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatga 154  Q
    |||||||||||||||||||||||| |  |||||||||| |||||  |||||||||||||||||||||||||||| |||| ||||||||| |||||||| |    
T  33351400 agagtgaaccgaacaaaacgccgcgctttaatgttctctccaataccagctatactttgcctcaccaagtctttcactacaacactgtcgtccttaat-a 33351498  T
Q  155 aaggctgctctagaagagcaagctctcctaat 186  Q
    |||| ||| |||||||||||||||||||||||    
T  33351499 aaggatgccctagaagagcaagctctcctaat 33351530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 370 - 542
Target Start/End: Original strand, 33278972 - 33279139
Alignment:
Q  370 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 469  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 33279071  T
Q  470 caactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 542  Q
     | ||    | ||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  33279072 tagct----tgccggatttcttgtcagctgataagagaccc-tttttctaaggtatgcttgcgccttttcatg 33279139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 543 - 728
Target Start/End: Complemental strand, 24632161 - 24631975
Alignment:
Q  543 caagtgttggtgatatagttgctgcaattcaaagggga-cagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 641  Q
    |||||| |||||||| |||||||||||| ||||  ||| ||||| |||||||||| ||||| ||| |||||||| |||||||||||| |||||||| | |    
T  24632161 caagtgctggtgataaagttgctgcaatccaaacaggagcagaacagacatttaacaattagaaatcttatgtaggaattcaaagattggtgaacaagtt 24632062  T
Q  642 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctat 728  Q
     |||||||||||| | ||||||||||  ||| ||||||||  ||| ||||||||| ||||||||| || |||||||| |||||||||    
T  24632061 ggaaaactaagacctcgtttggataagcaacttaattaaatattataagataaacgcttatcatataagtgcttatgcataagctat 24631975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 33292802 - 33292912
Alignment:
Q  101 cagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattct 200  Q
    ||||||||||||||||| |||||||||| |   ||||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||    
T  33292802 cagctatactttgcctctccaagtctttcaaagaaacactgtcatccttaatgaaaggctgctctataagagaaagccctcctaacctctttgagattct 33292901  T
Q  201 tccctcaacaa 211  Q
    |||||||||||    
T  33292902 tccctcaacaa 33292912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 436 - 540
Target Start/End: Original strand, 33293090 - 33293194
Alignment:
Q  436 gaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgcct 535  Q
    |||||||||||||||||| | ||||||||||||||  || |||||| ||||||||| |||||| |||||||||||||||||||||||||||||| | |||    
T  33293090 gaatcgtgaatgtatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcacct 33293189  T
Q  536 tttca 540  Q
    |||||    
T  33293190 tttca 33293194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 946 - 1047
Target Start/End: Original strand, 33416366 - 33416469
Alignment:
Q  946 aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt 1043  Q
    |||||||||||||| |  || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  33416366 aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat 33416465  T
Q  1044 agaa 1047  Q
    ||||    
T  33416466 agaa 33416469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 33258067 - 33258170
Alignment:
Q  69 aaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctaga 168  Q
    |||||||| |||  ||||| |||||| |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  33258067 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga 33258166  T
Q  169 agag 172  Q
    ||||    
T  33258167 agag 33258170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 287 - 377
Target Start/End: Original strand, 33292988 - 33293078
Alignment:
Q  287 tggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaattt 377  Q
    |||||||  |||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||| ||| ||||||||||||||    
T  33292988 tggttttgagaatatcttcaatagatacaaactgaacctgaagaatagcagcaacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 33269355 - 33269427
Alignment:
Q  135 aacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctca 207  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||    
T  33269355 aacactgtcatccttaataaaaggctactctagaagagcaagctctcctaacctctttgagatttttccctca 33269427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 587 - 769
Target Start/End: Original strand, 9165228 - 9165418
Alignment:
Q  587 agacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggctagaaaactaagactta-------gtttggataaataacctaatta 679  Q
    |||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||  ||| ||| ||  ||       |||||||||||   ||||||||    
T  9165228 agacatttaacaattagaaatcttatgtaaaaattcaaagataggtgaacaggctgcaaacctatgagctatgaccttgtttggataaacgccctaatta 9165327  T
Q  680 aagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaaga--taaaatgaagtcatactgttttcctata 769  Q
    ||||||| |||||||   |||| |||| || | ||||||||||||||||||||||| ||| |  ||| ||||||||||||||||||||||||    
T  9165328 aagcttataagataagtgctta-catataagtacttatgtataagctatttttataacaaaaggtaagatgaagtcatactgttttcctata 9165418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 373 - 497
Target Start/End: Original strand, 33280358 - 33280482
Alignment:
Q  373 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 472  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  33280358 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 33280457  T
Q  473 ctcgtcttccggatttcttgtcagc 497  Q
     |  |||||||||||||||||||||    
T  33280458 ttaatcttccggatttcttgtcagc 33280482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 780 - 886
Target Start/End: Complemental strand, 24631970 - 24631864
Alignment:
Q  780 ataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 879  Q
    ||||||||||||| ||| | |  ||||||||||| |||||| ||||| ||||||| ||||  ||||||||||| |||||||| ||| ||| |||||||||    
T  24631970 ataagcttttctaaacagcttttggaaataagctaaaaacagcttttatggacatatcatgagttgtttccataaactcttccaaatagtttcacaagtg 24631871  T
Q  880 ctaatat 886  Q
    || ||||    
T  24631870 cttatat 24631864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 698 - 772
Target Start/End: Complemental strand, 29274376 - 29274300
Alignment:
Q  698 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 772  Q
    ||||||||| || |||||||||||||||||||| ||||||  |||||||||| |||||| | ||||||| |||||||    
T  29274376 cttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagc 29274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 31567468 - 31567428
Alignment:
Q  145 tccttaatgaaaggctgctctagaagagcaagctctcctaa 185  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  31567468 tccttaatgaaaggctgctctagaagagaaagctctcctaa 31567428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 494 - 540
Target Start/End: Complemental strand, 28873091 - 28873045
Alignment:
Q  494 cagcggatgagagacccttttttctgaggtatgcttgcgccttttca 540  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttca 28873045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 803 - 878
Target Start/End: Complemental strand, 281881 - 281808
Alignment:
Q  803 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 878  Q
    |||||||||||||||||||||| |   ||||||||||  |||| |||||||| |||| | ||||||||||||||||    
T  281881 ggaaataagctgaaaacaacttata--gacatgtcataagttgcttccattagctctcccaaacagtctcacaagt 281808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 588 - 629
Target Start/End: Original strand, 33282241 - 33282282
Alignment:
Q  588 gacatttaaaaattacaaaccttatgtaagaattcaaagata 629  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33282241 gacatttaaaaattagaaatcttatgtaagaattcaacgata 33282282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 588 - 629
Target Start/End: Original strand, 33398042 - 33398083
Alignment:
Q  588 gacatttaaaaattacaaaccttatgtaagaattcaaagata 629  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33398042 gacatttaaaaattataaatcttatgtaagaattcaacgata 33398083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 588 - 629
Target Start/End: Original strand, 33408952 - 33408993
Alignment:
Q  588 gacatttaaaaattacaaaccttatgtaagaattcaaagata 629  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33408952 gacatttaaaaattataaatcttatgtaagaattcaacgata 33408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 3e-60; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 319 - 540
Target Start/End: Complemental strand, 17447982 - 17447760
Alignment:
Q  319 tgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 418  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| || | |||||| |||||| | |||| |||||    
T  17447982 tgaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaa 17447883  T
Q  419 ttagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagaga-cccttttttc 517  Q
    ||||| |||  ||| ||| |||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||||| ||||||||||    
T  17447882 ttagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttc 17447783  T
Q  518 tgaggtatgcttgcgccttttca 540  Q
    |||||||||||||||||||||||    
T  17447782 tgaggtatgcttgcgccttttca 17447760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 45 - 211
Target Start/End: Complemental strand, 17445910 - 17445747
Alignment:
Q  45 tgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtca 144  Q
    |||||||||  ||||||||| |||||||||||||||  |||    ||| ||||| ||||||||||||||||||||||| | ||| ||| |||| ||||||    
T  17445910 tgtttctccgggagtgaacctaacaaaacgccgcactttaaa---ctctccaatagcagctatactttgcctcaccaaatatttcactgaaacgctgtca 17445814  T
Q  145 tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||    
T  17445813 tccttaatgaaaggctgctctagaagagcaagctctcctaacctctttgagatccttccctcgacaa 17445747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 17445679 - 17445607
Alignment:
Q  276 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcatt 348  Q
    |||| ||||| ||||||  ||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  17445679 cttcttcacaatggtttcgggaatatcttcaatagatacaaactgaacatgtggacaagcatcaacttgcatt 17445607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 844 - 909
Target Start/End: Complemental strand, 17443602 - 17443537
Alignment:
Q  844 tgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 909  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaatacatc 17443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 691 - 772
Target Start/End: Original strand, 34339039 - 34339122
Alignment:
Q  691 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 772  Q
    |||||||||||||||| || ||||||||||||| || ||| ||||||  |||||||||| |||||| ||||||||| |||||||    
T  34339039 ataaacacttatcatataagtgcttatgtataaactttttctatagctaaagataaaataaagtcagactgttttcgtataagc 34339122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 699 - 739
Target Start/End: Original strand, 3102617 - 3102657
Alignment:
Q  699 ttatcataaaattgcttatgtataagctatttttatagcaa 739  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  3102617 ttatcatataactgcttatgtataagctatttttatagcaa 3102657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 804 - 881
Target Start/End: Complemental strand, 14299663 - 14299588
Alignment:
Q  804 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 881  Q
    ||||||||||||||||||  | | |||| |||||||  ||||||||||| |||||||| |||||||| | ||||||||    
T  14299663 gaaataagctgaaaacaa--tgtatggatatgtcataagttgtttccataaactcttccaaacagtccctcaagtgct 14299588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 711 - 772
Target Start/End: Complemental strand, 7103615 - 7103554
Alignment:
Q  711 tgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 772  Q
    |||||||||| || |||| |||||| ||||||||||| |||||| ||||||||  |||||||    
T  7103615 tgcttatgtagaaactatatttataacaagataaaataaagtcaaactgttttaatataagc 7103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 102; Significance: 4e-50; HSPs: 7)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 313 - 540
Target Start/End: Original strand, 2308 - 2537
Alignment:
Q  313 acaaactgaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttc 411  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  |||    
T  2308 acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttc 2407  T
Q  412 acttcaattagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccc 510  Q
    |||||||||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| ||||||||||||||||||    
T  2408 acttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccc 2507  T
Q  511 ttttttctgaggtatgcttgcgccttttca 540  Q
    |||||  |||| |||||||||| |||||||    
T  2508 tttttgatgagatatgcttgcggcttttca 2537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 673 - 909
Target Start/End: Original strand, 3802 - 4047
Alignment:
Q  673 ctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctata- 769  Q
    |||||| ||||||| ||||||| | |||  |||| || ||||||||| ||||||||||||||| |||  |||||| |||||||||||||||||||||||     
T  3802 ctaattcaagcttataagataagcgctttacatataagtgcttatgtgtaagctatttttataacaaaagataaactgaagtcatactgttttcctatat 3901  T
Q  770 ------agcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcga 863  Q
          ||| |||||||||||||||||||||||  ||| | |||   |||||||||| ||||| ||||||||||||  |  |||||||| |||||||| |    
T  3902 gctataagctattttcataagcttttctagacagtatatgtaaaatggctgaaaacagcttttatggacatgtcatgagccgtttccataaactcttcca 4001  T
Q  864 aacagtctcacaagtgctaatatgactgtataagttcaaatacatc 909  Q
    |||||||||||||||||| |||| | | ||||||||||||||||||    
T  4002 aacagtctcacaagtgcttatatcaatatataagttcaaatacatc 4047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 370 - 542
Target Start/End: Complemental strand, 15281 - 15114
Alignment:
Q  370 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 469  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 15182  T
Q  470 caactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 542  Q
     | ||    | ||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  15181 tagct----tgccggatttcttgtcagctgataagagaccc-tttttctaaggtatgcttgcgccttttcatg 15114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 2188 - 2291
Alignment:
Q  69 aaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctaga 168  Q
    |||||||| |||  ||||| |||||| |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  2188 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga 2287  T
Q  169 agag 172  Q
    ||||    
T  2288 agag 2291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 373 - 497
Target Start/End: Complemental strand, 13895 - 13771
Alignment:
Q  373 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 472  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  13895 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 13796  T
Q  473 ctcgtcttccggatttcttgtcagc 497  Q
     |  |||||||||||||||||||||    
T  13795 ttaatcttccggatttcttgtcagc 13771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 543 - 629
Target Start/End: Original strand, 3704 - 3791
Alignment:
Q  543 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagata 629  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| ||||||||||||||||||||||    
T  3704 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagata 3791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 588 - 629
Target Start/End: Complemental strand, 12011 - 11970
Alignment:
Q  588 gacatttaaaaattacaaaccttatgtaagaattcaaagata 629  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  12011 gacatttaaaaattagaaatcttatgtaagaattcaacgata 11970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 3e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 947 - 1032
Target Start/End: Complemental strand, 30653360 - 30653275
Alignment:
Q  947 aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttactt 1032  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||| ||||||    
T  30653360 aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt 30653275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 698 - 820
Target Start/End: Original strand, 11684346 - 11684468
Alignment:
Q  698 cttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaa 797  Q
    ||||||||| || |||| |||||||||||||||||||| ||| ||| ||   ||| | ||||||||| ||||||| ||||||||||||| | || || |     
T  11684346 cttatcatataagtgctaatgtataagctatttttataacaaaatataaaatagtgaaactgttttcatataagctattttcataagctatgctggagag 11684445  T
Q  798 catacggaaataagctgaaaaca 820  Q
    | |||||||||||| ||||||||    
T  11684446 cttacggaaataagttgaaaaca 11684468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 774 - 839
Target Start/End: Complemental strand, 30653438 - 30653373
Alignment:
Q  774 attttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 839  Q
    ||||||||||||||||||||||| | || |||||||||||||||||| ||||| || |||||||||    
T  30653438 attttcataagcttttctagacagcttatggaaataagctgaaaacagcttttatgaacatgtcat 30653373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 691 - 772
Target Start/End: Complemental strand, 32059742 - 32059660
Alignment:
Q  691 ataaacacttatcataaaattgcttatgtataagctatttttatagc-aagataaaatgaagtcatactgttttcctataagc 772  Q
    ||||| |||||||||| || |||||||||||||||| ||||| || | |||||||||| |||||| ||||||||| |||||||    
T  32059742 ataaatacttatcatataagtgcttatgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagc 32059660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 691 - 735
Target Start/End: Original strand, 10391269 - 10391313
Alignment:
Q  691 ataaacacttatcataaaattgcttatgtataagctatttttata 735  Q
    |||||||||||||||| || |||||| ||||||||||||||||||    
T  10391269 ataaacacttatcatataagtgcttacgtataagctatttttata 10391313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 828 - 879
Target Start/End: Original strand, 11457158 - 11457209
Alignment:
Q  828 tggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 879  Q
    ||||||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  11457158 tggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtg 11457209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 730
Target Start/End: Complemental strand, 29115367 - 29115328
Alignment:
Q  691 ataaacacttatcataaaattgcttatgtataagctattt 730  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  29115367 ataaacatttatcataaaagtgcttatgtataagctattt 29115328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 803 - 881
Target Start/End: Complemental strand, 13000457 - 13000381
Alignment:
Q  803 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 881  Q
    ||||||||||||||||||||||  |||||||||||||  |||||| |||| |||||||  ||| |||||||||||||||    
T  13000457 ggaaataagctgaaaacaactt--gtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgct 13000381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 696 - 764
Target Start/End: Original strand, 26717178 - 26717246
Alignment:
Q  696 cacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttc 764  Q
    ||||||||||| || ||||| || |||||||| ||||||| ||||||||||| |||||| ||| |||||    
T  26717178 cacttatcatataagtgcttctgaataagctaattttataacaagataaaataaagtcaaactattttc 26717246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 786
Target Start/End: Original strand, 5290566 - 5290649
Alignment:
Q  700 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagct 786  Q
    ||||||| || |||||||||||||||||||| |||| ||| |||||||  ||||| ||||||||| | ||||| || ||||||||||    
T  5290566 tatcatacaagtgcttatgtataagctatttctataacaa-ataaaat--agtcaaactgttttcatgtaagctatattcataagct 5290649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 754
Target Start/End: Complemental strand, 26716590 - 26716527
Alignment:
Q  691 ataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 754  Q
    |||||||||||| ||| || ||||||||||||||||| || |||| |||||| |||| ||||||    
T  26716590 ataaacacttattatataagtgcttatgtataagctacttctataacaagattaaataaagtca 26716527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 803 - 881
Target Start/End: Complemental strand, 30191174 - 30191098
Alignment:
Q  803 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 881  Q
    ||||||||||||||||||| |||||   |||||||||  ||||||||||| | |||| | ||||||||| |||||||||    
T  30191174 ggaaataagctgaaaacaagttttga--acatgtcataagttgtttccataagctctcccaaacagtctaacaagtgct 30191098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 738 - 824
Target Start/End: Complemental strand, 10079168 - 10079082
Alignment:
Q  738 aagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaactt 824  Q
    ||||||||||||||||| ||||||||| |||||||  ||||||| |||| |||| || |   || ||||| ||||| ||||||||||    
T  10079168 aagataaaatgaagtcaaactgttttcgtataagctgttttcatgagctattctggaaagtttatggaaagaagcttaaaacaactt 10079082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 775 - 824
Target Start/End: Original strand, 30389108 - 30389157
Alignment:
Q  775 ttttcataagcttttctagacaacatacggaaataagctgaaaacaactt 824  Q
    |||||||||||||| ||||| ||| || | ||||||||||||||||||||    
T  30389108 ttttcataagctttcctagagaacttatgaaaataagctgaaaacaactt 30389157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 698 - 772
Target Start/End: Complemental strand, 34788574 - 34788498
Alignment:
Q  698 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 772  Q
    ||||||||| || |||||| |||||||||||||||||  |  |||||||||| |||||| ||||||| | |||||||    
T  34788574 cttatcatataaatgcttacgtataagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagc 34788498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 803 - 879
Target Start/End: Original strand, 43115093 - 43115167
Alignment:
Q  803 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 879  Q
    ||||||||||||||||||| || ||  ||||||||||  ||||||||||| |||||||| ||||| |||||||||||    
T  43115093 ggaaataagctgaaaacaagttatg--gacatgtcataagttgtttccataaactcttccaaacaatctcacaagtg 43115167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 691 - 769
Target Start/End: Original strand, 38462197 - 38462277
Alignment:
Q  691 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctata 769  Q
    |||||||||||||||| || || |||| |||||||||||| |||| |  |||||||||| |||||| ||||||||| ||||    
T  38462197 ataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 698 - 771
Target Start/End: Original strand, 22232749 - 22232824
Alignment:
Q  698 cttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataag 771  Q
    ||||||||| || |||| ||||||||||||||| |||| |||  |||||||| |||||| ||||||||| ||||||    
T  22232749 cttatcatataaatgctcatgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 764
Target Start/End: Complemental strand, 3016011 - 3015928
Alignment:
Q  682 gcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-gataaaatgaagtcatactgttttc 764  Q
    ||||| || |||||||||||| ||| || ||||||||||| |  ||||| |||| ||| ||||||||||||||| |||||||||    
T  3016011 gcttataacataaacacttattatataagtgcttatgtattaattatttctataacaaagataaaatgaagtcaaactgttttc 3015928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 803 - 881
Target Start/End: Original strand, 37273171 - 37273247
Alignment:
Q  803 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 881  Q
    ||||||||| |||||||||||| ||  ||||||||||  ||||||||||| | |||| | |||||||||||| ||||||    
T  37273171 ggaaataagttgaaaacaacttatg--gacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgct 37273247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 806 - 902
Target Start/End: Original strand, 24624250 - 24624344
Alignment:
Q  806 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaa 902  Q
    |||||||||||||||   ||| ||||||||||||  | ||||| ||| | |||||| ||||||||| |||||||||||| ||| |  ||||||||||    
T  24624250 aataagctgaaaacag--tttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaa 24624344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 766 - 879
Target Start/End: Original strand, 3468614 - 3468725
Alignment:
Q  766 tataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaa 865  Q
    |||||||  ||||||||| || | ||||| ||| |  ||||||||| || ||||||||| ||  ||||||||||| ||||||||||  |||||| |||||    
T  3468614 tataagcttttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatg--gacatgtcattagttgtttccaacaactctccgaaa 3468711  T
Q  866 cagtctcacaagtg 879  Q
    |||||||| |||||    
T  3468712 cagtctcaaaagtg 3468725  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 691 - 772
Target Start/End: Complemental strand, 3610894 - 3610811
Alignment:
Q  691 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 772  Q
    |||||||||| ||||| || |||||||||||||||||||| || | |  |||||||||||||| || ||||||||  |||||||    
T  3610894 ataaacacttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagc 3610811  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 699 - 820
Target Start/End: Complemental strand, 26935696 - 26935573
Alignment:
Q  699 ttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagaca 796  Q
    |||||||| || ||||| ||| ||||||||||||||| |||  |||||||| | || | | ||||||| ||| ||| |||||||||| || ||||| | |    
T  26935696 ttatcatataagtgcttttgtgtaagctatttttataacaaatgataaaataaggttaaattgttttcatatgagctattttcataatctattctaaaga 26935597  T
Q  797 acatacggaaataagctgaaaaca 820  Q
     | || ||||||||||||||||||    
T  26935596 gcttatggaaataagctgaaaaca 26935573  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 735
Target Start/End: Complemental strand, 22388093 - 22388014
Alignment:
Q  657 agtttggataaataacctaattaaa-gcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 735  Q
    |||||||||||| ||| |||||||  ||||| || |||||||||||||||  || |||||||| ||||||||||| ||||    
T  22388093 agtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctata 22388014  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 701 - 754
Target Start/End: Original strand, 44207697 - 44207750
Alignment:
Q  701 atcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 754  Q
    |||||| || ||||||| | ||||||||||||||||||||||||||| ||||||    
T  44207697 atcatacaagtgcttatatgtaagctatttttatagcaagataaaataaagtca 44207750  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 830 - 881
Target Start/End: Original strand, 15581316 - 15581367
Alignment:
Q  830 gacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 881  Q
    ||||||||||  ||||||||||||| |||||| ||||| |||||||||||||    
T  15581316 gacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgct 15581367  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 713 - 786
Target Start/End: Complemental strand, 21410 - 21335
Alignment:
Q  713 cttatgtataagctatttttatag--caagataaaatgaagtcatactgttttcctataagcgattttcataagct 786  Q
    ||||||||||||||||||||||||   |||||||||| |||| | | ||||||| |||||||  ||||||||||||    
T  21410 cttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagct 21335  T

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Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 700 - 754
Target Start/End: Complemental strand, 32920543 - 32920489
Alignment:
Q  700 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 754  Q
    ||||||| || || ||||| |||||||||||||||| ||||||||||| ||||||    
T  32920543 tatcatataagtgtttatggataagctatttttataacaagataaaataaagtca 32920489  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 697 - 764
Target Start/End: Original strand, 47970240 - 47970309
Alignment:
Q  697 acttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc 764  Q
    |||| ||||| || |||||||||||||||||||| |||| |  ||||||||||||||||| ||| |||||    
T  47970240 acttgtcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttc 47970309  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 714 - 784
Target Start/End: Complemental strand, 55437415 - 55437345
Alignment:
Q  714 ttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataag 784  Q
    |||| |||||||||||| |||| ||| ||||||| |||||| | | ||||| ||||||| |||||||||||    
T  55437415 ttatctataagctatttctataacaatataaaataaagtcaaattattttcatataagctattttcataag 55437345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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