View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21063_high_25 (Length: 237)

Name: NF21063_high_25
Description: NF21063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21063_high_25
NF21063_high_25
[»] chr8 (8 HSPs)
chr8 (203-237)||(5839004-5839038)
chr8 (203-237)||(17155333-17155367)
chr8 (207-237)||(25100896-25100926)
chr8 (203-237)||(35159571-35159605)
chr8 (207-237)||(38745410-38745440)
chr8 (207-237)||(40530239-40530269)
chr8 (207-237)||(43800108-43800138)
chr8 (208-237)||(22215858-22215887)
[»] chr3 (11 HSPs)
chr3 (203-237)||(52184313-52184347)
chr3 (207-237)||(1362461-1362491)
chr3 (207-237)||(2557186-2557216)
chr3 (207-237)||(8320754-8320784)
chr3 (207-237)||(8880145-8880175)
chr3 (207-237)||(30317273-30317303)
chr3 (207-237)||(34435303-34435333)
chr3 (207-237)||(36238627-36238657)
chr3 (207-237)||(41990966-41990996)
chr3 (208-237)||(30741163-30741192)
chr3 (208-237)||(35406336-35406365)
[»] scaffold0464 (1 HSPs)
scaffold0464 (207-237)||(5408-5438)
[»] scaffold0330 (1 HSPs)
scaffold0330 (207-237)||(7761-7791)
[»] chr7 (12 HSPs)
chr7 (207-237)||(6244616-6244646)
chr7 (207-237)||(28493558-28493588)
chr7 (207-237)||(29993383-29993413)
chr7 (207-237)||(42264586-42264616)
chr7 (207-237)||(42327038-42327068)
chr7 (207-237)||(42327440-42327470)
chr7 (207-237)||(43002607-43002637)
chr7 (203-237)||(43158026-43158060)
chr7 (207-237)||(43338403-43338433)
chr7 (207-237)||(46536865-46536895)
chr7 (207-237)||(46614958-46614988)
chr7 (207-237)||(48312847-48312877)
[»] chr6 (5 HSPs)
chr6 (203-237)||(13755616-13755650)
chr6 (207-237)||(18368912-18368942)
chr6 (207-237)||(22708060-22708090)
chr6 (203-237)||(25022270-25022304)
chr6 (208-237)||(32986263-32986292)
[»] chr5 (8 HSPs)
chr5 (207-237)||(15499418-15499448)
chr5 (207-237)||(27812340-27812370)
chr5 (207-237)||(29524651-29524681)
chr5 (207-237)||(34589210-34589240)
chr5 (207-237)||(35639542-35639572)
chr5 (207-237)||(36761892-36761922)
chr5 (203-237)||(41733596-41733630)
chr5 (208-237)||(22777955-22777984)
[»] chr4 (7 HSPs)
chr4 (207-237)||(19801149-19801179)
chr4 (207-237)||(33984838-33984868)
chr4 (207-237)||(37113678-37113708)
chr4 (207-237)||(39839448-39839478)
chr4 (207-237)||(47633175-47633205)
chr4 (207-237)||(53284747-53284777)
chr4 (208-237)||(32013133-32013162)
[»] chr2 (3 HSPs)
chr2 (207-237)||(7455274-7455304)
chr2 (207-237)||(16495903-16495933)
chr2 (204-237)||(39239892-39239925)
[»] chr1 (6 HSPs)
chr1 (207-237)||(3569691-3569721)
chr1 (207-237)||(11824328-11824358)
chr1 (207-237)||(30358820-30358850)
chr1 (207-237)||(45900875-45900905)
chr1 (207-237)||(46311985-46312015)
chr1 (207-237)||(50585530-50585560)


Alignment Details
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 5839038 - 5839004
Alignment:
Q  203 ataacttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||||||    
T  5839038 ataacttatagctgaaaagcttgcttattaaaaat 5839004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 17155333 - 17155367
Alignment:
Q  203 ataacttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||||||    
T  17155333 ataacttatagctgaaaagcttgcttattaaaaat 17155367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 25100926 - 25100896
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  25100926 cttatagctgaaaagcttgcttattaaaaat 25100896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 35159571 - 35159605
Alignment:
Q  203 ataacttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||| ||||||||||||||||||||||||    
T  35159571 ataacttataactgaaaagcttgcttattaaaaat 35159605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 38745410 - 38745440
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  38745410 cttatagctgaaaagcttgcttattaaaaat 38745440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 40530269 - 40530239
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  40530269 cttatagctgaaaagcttgcttattaaaaat 40530239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 43800108 - 43800138
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  43800108 cttatagctgaaaagcttgcttattaaaaat 43800138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 237
Target Start/End: Complemental strand, 22215887 - 22215858
Alignment:
Q  208 ttatagctgaaaagcttgcttattaaaaat 237  Q
    ||||||||||||||||||||||||||||||    
T  22215887 ttatagctgaaaagcttgcttattaaaaat 22215858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 52184313 - 52184347
Alignment:
Q  203 ataacttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||||||    
T  52184313 ataacttatagctgaaaagcttgcttattaaaaat 52184347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 1362491 - 1362461
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  1362491 cttatagctgaaaagcttgcttattaaaaat 1362461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 2557186 - 2557216
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  2557186 cttatagctgaaaagcttgcttattaaaaat 2557216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 8320754 - 8320784
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  8320754 cttatagctgaaaagcttgcttattaaaaat 8320784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 8880175 - 8880145
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  8880175 cttatagctgaaaagcttgcttattaaaaat 8880145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 30317273 - 30317303
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  30317273 cttatagctgaaaagcttgcttattaaaaat 30317303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 34435303 - 34435333
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  34435303 cttatagctgaaaagcttgcttattaaaaat 34435333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 36238657 - 36238627
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  36238657 cttatagctgaaaagcttgcttattaaaaat 36238627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 41990966 - 41990996
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  41990966 cttatagctgaaaagcttgcttattaaaaat 41990996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 237
Target Start/End: Original strand, 30741163 - 30741192
Alignment:
Q  208 ttatagctgaaaagcttgcttattaaaaat 237  Q
    ||||||||||||||||||||||||||||||    
T  30741163 ttatagctgaaaagcttgcttattaaaaat 30741192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 237
Target Start/End: Complemental strand, 35406365 - 35406336
Alignment:
Q  208 ttatagctgaaaagcttgcttattaaaaat 237  Q
    ||||||||||||||||||||||||||||||    
T  35406365 ttatagctgaaaagcttgcttattaaaaat 35406336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 5438 - 5408
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  5438 cttatagctgaaaagcttgcttattaaaaat 5408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 7791 - 7761
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  7791 cttatagctgaaaagcttgcttattaaaaat 7761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 6244646 - 6244616
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  6244646 cttatagctgaaaagcttgcttattaaaaat 6244616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 28493558 - 28493588
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  28493558 cttatagctgaaaagcttgcttattaaaaat 28493588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 29993383 - 29993413
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  29993383 cttatagctgaaaagcttgcttattaaaaat 29993413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 42264586 - 42264616
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  42264586 cttatagctgaaaagcttgcttattaaaaat 42264616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 42327038 - 42327068
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  42327038 cttatagctgaaaagcttgcttattaaaaat 42327068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 42327440 - 42327470
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  42327440 cttatagctgaaaagcttgcttattaaaaat 42327470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 43002637 - 43002607
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  43002637 cttatagctgaaaagcttgcttattaaaaat 43002607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 43158060 - 43158026
Alignment:
Q  203 ataacttatagctgaaaagcttgcttattaaaaat 237  Q
    ||||||||||||| |||||||||||||||||||||    
T  43158060 ataacttatagctaaaaagcttgcttattaaaaat 43158026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 43338433 - 43338403
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  43338433 cttatagctgaaaagcttgcttattaaaaat 43338403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 46536895 - 46536865
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  46536895 cttatagctgaaaagcttgcttattaaaaat 46536865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 46614958 - 46614988
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  46614958 cttatagctgaaaagcttgcttattaaaaat 46614988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 48312847 - 48312877
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  48312847 cttatagctgaaaagcttgcttattaaaaat 48312877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 13755616 - 13755650
Alignment:
Q  203 ataacttatagctgaaaagcttgcttattaaaaat 237  Q
    ||||||||||||||||||| |||||||||||||||    
T  13755616 ataacttatagctgaaaagtttgcttattaaaaat 13755650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 18368912 - 18368942
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  18368912 cttatagctgaaaagcttgcttattaaaaat 18368942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 22708090 - 22708060
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  22708090 cttatagctgaaaagcttgcttattaaaaat 22708060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 25022270 - 25022304
Alignment:
Q  203 ataacttatagctgaaaagcttgcttattaaaaat 237  Q
    ||||||||||||||||||| |||||||||||||||    
T  25022270 ataacttatagctgaaaagtttgcttattaaaaat 25022304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 237
Target Start/End: Original strand, 32986263 - 32986292
Alignment:
Q  208 ttatagctgaaaagcttgcttattaaaaat 237  Q
    ||||||||||||||||||||||||||||||    
T  32986263 ttatagctgaaaagcttgcttattaaaaat 32986292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 15499448 - 15499418
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  15499448 cttatagctgaaaagcttgcttattaaaaat 15499418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 27812340 - 27812370
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  27812340 cttatagctgaaaagcttgcttattaaaaat 27812370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 29524651 - 29524681
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  29524651 cttatagctgaaaagcttgcttattaaaaat 29524681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 34589210 - 34589240
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  34589210 cttatagctgaaaagcttgcttattaaaaat 34589240  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 35639572 - 35639542
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  35639572 cttatagctgaaaagcttgcttattaaaaat 35639542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 36761922 - 36761892
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  36761922 cttatagctgaaaagcttgcttattaaaaat 36761892  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 41733596 - 41733630
Alignment:
Q  203 ataacttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||| ||||||||||||||||    
T  41733596 ataacttatagctgaaaaacttgcttattaaaaat 41733630  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 237
Target Start/End: Complemental strand, 22777984 - 22777955
Alignment:
Q  208 ttatagctgaaaagcttgcttattaaaaat 237  Q
    ||||||||||||||||||||||||||||||    
T  22777984 ttatagctgaaaagcttgcttattaaaaat 22777955  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 19801149 - 19801179
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  19801149 cttatagctgaaaagcttgcttattaaaaat 19801179  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 33984868 - 33984838
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  33984868 cttatagctgaaaagcttgcttattaaaaat 33984838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 37113678 - 37113708
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  37113678 cttatagctgaaaagcttgcttattaaaaat 37113708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 39839448 - 39839478
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  39839448 cttatagctgaaaagcttgcttattaaaaat 39839478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 47633175 - 47633205
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  47633175 cttatagctgaaaagcttgcttattaaaaat 47633205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 53284777 - 53284747
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  53284777 cttatagctgaaaagcttgcttattaaaaat 53284747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 237
Target Start/End: Complemental strand, 32013162 - 32013133
Alignment:
Q  208 ttatagctgaaaagcttgcttattaaaaat 237  Q
    ||||||||||||||||||||||||||||||    
T  32013162 ttatagctgaaaagcttgcttattaaaaat 32013133  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 7455304 - 7455274
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  7455304 cttatagctgaaaagcttgcttattaaaaat 7455274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 16495903 - 16495933
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  16495903 cttatagctgaaaagcttgcttattaaaaat 16495933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 39239892 - 39239925
Alignment:
Q  204 taacttatagctgaaaagcttgcttattaaaaat 237  Q
    ||||| ||||||||||||||||||||||||||||    
T  39239892 taactgatagctgaaaagcttgcttattaaaaat 39239925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 3569691 - 3569721
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  3569691 cttatagctgaaaagcttgcttattaaaaat 3569721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 11824358 - 11824328
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  11824358 cttatagctgaaaagcttgcttattaaaaat 11824328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 30358850 - 30358820
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  30358850 cttatagctgaaaagcttgcttattaaaaat 30358820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 45900905 - 45900875
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  45900905 cttatagctgaaaagcttgcttattaaaaat 45900875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 46311985 - 46312015
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  46311985 cttatagctgaaaagcttgcttattaaaaat 46312015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 50585530 - 50585560
Alignment:
Q  207 cttatagctgaaaagcttgcttattaaaaat 237  Q
    |||||||||||||||||||||||||||||||    
T  50585530 cttatagctgaaaagcttgcttattaaaaat 50585560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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