View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21063_high_28 (Length: 209)
Name: NF21063_high_28
Description: NF21063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21063_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 27075887 - 27076075
Alignment:
| Q |
14 |
agagtagtaagaaaatgcactcatgatgatgaagcatataaatgagtttgaaataccttaattttactaaaatgtaagaatttgagtaagcatgtcaatc |
113 |
Q |
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| T |
27075887 |
agagtagtaagaaaatgcactcatgatgatgaagcatataaatgagtttgaaataccttaattttactaaaatgtaagaatttgagtaagcatgtcaata |
27075986 |
T |
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| Q |
114 |
tatttaaaaaattattgtcgatatagaaggagatgtaattttgaggacatatgaatctatatatgacttatgatgttctatgtgatgatgt |
204 |
Q |
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| T |
27075987 |
tatttaaaaaattattgttgatatagaaggagatgtaattttgaggac--atgaatctatatatgacttatgatgttctatgtgatgatgt |
27076075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 26989393 - 26989200
Alignment:
| Q |
14 |
agagtagtaagaaaatgcactcatgatgatgaagcatataaatgagtttgaaataccttaattttactaaaatgtaagaatttgagtaagcatgtcaatc |
113 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || |||||| |
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| T |
26989393 |
agagtagtaagaaaatgcactcatgatgatgaaacatataaatgagtttgaaataccctaattttactaaaatgtatgaatttgagtaagtatttcaatc |
26989294 |
T |
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| Q |
114 |
tatttaaaaaattattgtcgatatagaaggagatgtaattttgaggacatatgaa-----tctatatatgacttatgatgttctatgtgatgatgt |
204 |
Q |
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| T |
26989293 |
tatttaaaaacttattgtcgatataggaggagatgtaattttgagg--atatgaatctactctatatataacttatgatgttctatgtgatgatgt |
26989200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 27152152 - 27152086
Alignment:
| Q |
141 |
aggagatgtaattttgaggacat--atgaa-tctatatatgacttatgatgttctatgtgatgatgt |
204 |
Q |
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| T |
27152152 |
aggagatgtaattttgaggacatgaatctactctatatataacttatgatgttctatgtgatgatgt |
27152086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 34691468 - 34691275
Alignment:
| Q |
14 |
agagtagtaagaaaatgcactcatgatgatgaagcatataaatgagtttgaaataccttaattttactaaaatgtaagaatttgagtaagcatgtcaatc |
113 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || |||||| |
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| T |
34691468 |
agagtagtaagaaaatgcactcatgatgatgaaacatataaatgagtttgaaataccctaattttactaaaatgtatgaatttgagtaagtatttcaatc |
34691369 |
T |
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| Q |
114 |
tatttaaaaaattattgtcgatatagaaggagatgtaattttgaggacat--at-gaatctatatatgacttatgatgttctatgtgatgatgt |
204 |
Q |
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| T |
34691368 |
tatttaaaaacttattgtcgatataggaggagatgtaattttgaggacatgaatctactctatatataacttatgatgttctatgtgatgatgt |
34691275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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