View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21063_high_3 (Length: 608)
Name: NF21063_high_3
Description: NF21063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21063_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 568; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 16 - 591
Target Start/End: Complemental strand, 42374061 - 42373486
Alignment:
| Q |
16 |
aaagggtgagggtttagagagttaataatatggcgcagcaagtgaataacgaaacaacaccttcaacaccggggaaattaaaaccggataaacctcatca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42374061 |
aaagggtgagggtttagagagttaataatatggcgcagcaagtgaataacgaaacaacaccttcaacaccggggaaattaaaaccggataaacctcatca |
42373962 |
T |
|
| Q |
116 |
ccgctttagaatccaccctccacattcaagatacacattcatctgcattctcttatccgcttttcttgtttttcttttattctccaccttcaaccctcca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42373961 |
ccgctttagaatccaccctccacattcaagatacacattcatctgcattctcttatccgcttttcttgtttttcttttattctccaccttcaaccctcca |
42373862 |
T |
|
| Q |
216 |
ccaccgtcaaccaccgcaccccgccgtgtcctcggtgactcatggggtggttctcactgggaacgtcttgtgtcgaaatcaactcgccggaattcggcat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42373861 |
ccaccgtcaaccaccgcaccccgccgtgtcctcggtgactcatggggtggttctcactgggaacgtcttgtgtcgaaatcaactcgccggaattcggcat |
42373762 |
T |
|
| Q |
316 |
ccaacaaaatcgttctcgtcaccggatccgctggtttcgtcggaagtcatgtcgcactcgctttaaaacgccgcggcgacggtgttcttgggattgataa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42373761 |
ccaacaaaatcgttctcgtcaccggatccgctggtttcgtcggaagtcatgtcgcactcgctttaaaacgccgcggcgacggtgttcttgggattgataa |
42373662 |
T |
|
| Q |
416 |
tttcaatcggtactatgatgttaacctaaaacacgcccgtcagaagcttctagaacgcgccggaattttcgtcgtggaaggtgatatcaacgacggtgcg |
515 |
Q |
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| T |
42373661 |
tttcaatcggtactatgatgttaacctaaaacacgcccgtcagaagcttctagaacgcgccggaattttcgtcgtggaaggtgatatcaacgacggtacg |
42373562 |
T |
|
| Q |
516 |
cttctcaagaagcttttcgatgtggttccgtttactcacgtgatgcatctcgcggcacaagctggtgttcgttatg |
591 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42373561 |
cttctcaagaagcttttcgatgtggttccgtttactcacgtgatgcatctcgcggcacaagctggtgttcgctatg |
42373486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 540 - 591
Target Start/End: Complemental strand, 42179415 - 42179364
Alignment:
| Q |
540 |
gttccgtttactcacgtgatgcatctcgcggcacaagctggtgttcgttatg |
591 |
Q |
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| T |
42179415 |
gttccgtttacgcacgtgatgcatcttgcggcacaagctggtgttcgttatg |
42179364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 525 - 583
Target Start/End: Original strand, 54114345 - 54114403
Alignment:
| Q |
525 |
aagcttttcgatgtggttccgtttactcacgtgatgcatctcgcggcacaagctggtgt |
583 |
Q |
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|||||||||||||| || | |||||||| |||||||||||||| || ||||||||||| |
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| T |
54114345 |
aagcttttcgatgttgtggcttttactcatgtgatgcatctcgcagctcaagctggtgt |
54114403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 346 - 447
Target Start/End: Complemental strand, 3521162 - 3521061
Alignment:
| Q |
346 |
ctggtttcgtcggaagtcatgtcgcactcgctttaaaacgccgcggcgacggtgttcttgggattgataatttcaatcggtactatgatgttaacctaaa |
445 |
Q |
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||||||||||||| | |||||| | |||||| | || || || ||||| || ||| | ||||||||||||||||||||||| |||||| ||||||| || |
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| T |
3521162 |
ctggtttcgtcggtatgcatgtctcgctcgctcttaagcgacgtggcgatggggttttagggattgataatttcaatcggtattatgatattaacctcaa |
3521063 |
T |
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| Q |
446 |
ac |
447 |
Q |
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|| |
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| T |
3521062 |
ac |
3521061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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