View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21063_high_4 (Length: 528)

Name: NF21063_high_4
Description: NF21063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21063_high_4
NF21063_high_4
[»] chr6 (26 HSPs)
chr6 (206-508)||(33411082-33411382)
chr6 (212-508)||(31561460-31561753)
chr6 (222-508)||(33643253-33643539)
chr6 (206-504)||(33305616-33305911)
chr6 (242-508)||(9167937-9168200)
chr6 (222-508)||(33389215-33389501)
chr6 (321-516)||(28869414-28869609)
chr6 (222-514)||(33272938-33273227)
chr6 (223-508)||(33401761-33402043)
chr6 (212-508)||(33286678-33286971)
chr6 (220-508)||(33263793-33264078)
chr6 (206-508)||(33058693-33058992)
chr6 (16-134)||(33388986-33389098)
chr6 (17-134)||(33286491-33286599)
chr6 (18-67)||(33410916-33410965)
chr6 (16-66)||(9167705-9167755)
chr6 (17-50)||(31561902-31561935)
chr6 (17-50)||(33263583-33263616)
chr6 (90-134)||(33305490-33305534)
chr6 (16-55)||(33359654-33359693)
chr6 (95-134)||(33359721-33359760)
chr6 (16-55)||(33401565-33401604)
chr6 (96-134)||(33058585-33058623)
chr6 (16-49)||(33272744-33272777)
chr6 (96-133)||(33643636-33643673)
chr6 (19-55)||(33643708-33643744)
[»] scaffold0428 (1 HSPs)
scaffold0428 (223-508)||(7907-8189)
[»] chr2 (3 HSPs)
chr2 (206-514)||(17439473-17439778)
chr2 (94-134)||(17439856-17439896)
chr2 (18-50)||(17439928-17439960)
[»] chr4 (15 HSPs)
chr4 (220-508)||(31502745-31503051)
chr4 (223-508)||(31477622-31477907)
chr4 (206-451)||(31497632-31497870)
chr4 (277-436)||(31527601-31527760)
chr4 (266-451)||(31149529-31149714)
chr4 (371-508)||(31028967-31029104)
chr4 (266-441)||(31158430-31158605)
chr4 (298-451)||(31483536-31483689)
chr4 (374-442)||(31019089-31019157)
chr4 (473-508)||(31019188-31019223)
chr4 (472-508)||(31158636-31158672)
chr4 (381-431)||(31490400-31490450)
chr4 (93-134)||(31477988-31478029)
chr4 (92-133)||(31483839-31483880)
chr4 (471-508)||(31527795-31527832)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 206 - 508
Target Start/End: Original strand, 33411082 - 33411382
Alignment:
Q  206 atttccaaacagcaactttaccattttctcaatgataacattgtagagttgttttttggaccacaccctgctccactttctttgctctttgcttgaattt 305  Q
    ||||| ||||||  |||||||||| ||||| || ||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  33411082 atttctaaacagttactttaccatattctccatcataacgttgtagagttgttttttggaccagatcctgctccactttctttgctctttgcttgaattt 33411181  T
Q  306 tctcgcacaatttttctgcctagctctttcaacaaagaatgcatttcaattctctttgaatgatcaatgcttataagtgatttatcaatgagaattctta 405  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||| ||   | |||| ||  ||||||||||||||||||||||||||||||| || ||    
T  33411182 tcttgcacaatttttctgcctagctcttccaacaaagaatgcattttaa---tatttgcatcctcaatgcttataagtgatttatcaatgagaactccta 33411278  T
Q  406 atccaatatcagcatgaaatccacaacaatttagaatgtttttaactattttctc-gggccaagagttgaaaaaacaagcaatatcaagaaatatttctt 504  Q
    |||||||||||||||||||||||||||||||||||| |||||||||   |||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  33411279 atccaatatcagcatgaaatccacaacaatttagaacgtttttaacatatttctcggggctgagagttgaaaaaacaagcaatatcaagaaatatttctt 33411378  T
Q  505 tttc 508  Q
    ||||    
T  33411379 tttc 33411382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 212 - 508
Target Start/End: Complemental strand, 31561753 - 31561460
Alignment:
Q  212 aaacagcaactttaccattttctcaatgataacattgtagagttgttttttggaccacaccctgctccactttctttgctctttgcttgaattttctcgc 311  Q
    |||||| ||||||||||||||||| || ||||||||||||| |||||  | |||||||| ||||||||||||||||||||||||||||||| ||||| ||    
T  31561753 aaacagaaactttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttctttgctctttgcttgaactttcttgc 31561654  T
Q  312 acaatttttctgcctagctctttcaacaaagaatgcatttcaattctctttgaatgatcaatgcttataagtgatttatcaatgagaattcttaatccaa 411  Q
    ||||||||||||||||| |||| ||||||| ||||||||| |||| |   ||||| |||||||||||||||||||||||||| ||||| |||||||||||    
T  31561653 acaatttttctgcctagttcttccaacaaataatgcattttaattat---tgaattatcaatgcttataagtgatttatcaaggagaactcttaatccaa 31561557  T
Q  412 tatcagcatgaaatccacaacaatttagaatgtttttaactattttctcgggccaagagttgaaaaaacaagcaatatcaagaaatatttctttttc 508  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||| ||  | ||||||||||||||||||||| |||||| |||||||||||    
T  31561556 tatcagcatgaaatccacaactatttagaatgtttttaactcttttctcgtgcagaaagttgaaaaaacaagcaatatgaagaaacatttctttttc 31561460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 222 - 508
Target Start/End: Complemental strand, 33643539 - 33643253
Alignment:
Q  222 tttaccattttctcaatgataacattgtagagttgttttttggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttc 321  Q
    |||||||| ||||| || | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||     
T  33643539 tttaccatattctccatcacaacattgtagatttgttttttggaccacagcctgctccactttctttgctctttgcttgaattttcttgcacaatttttt 33643440  T
Q  322 tgcctagctctttcaacaaagaatgcatttcaattctctttgaatgatcaatgcttataagtgatttatcaatgagaattcttaatccaatatcagcatg 421  Q
    | ||||||||||  |||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  33643439 ttcctagctcttctaacagagaatgcatttcaatcctcattgaataatcaatgcttataagtgatttatcaatgagaactcttaacccaatatcagcatg 33643340  T
Q  422 aaatccacaacaatttagaatgtttttaactattttctcgggccaagagttgaaaaaacaagcaatatcaagaaatatttctttttc 508  Q
    ||||||||||||||||| |||||||||| |   ||||||| |  ||  |||||||||||||||||||||||||||||||||||||||    
T  33643339 aaatccacaacaatttaaaatgtttttagcatatttctcgtgataaccgttgaaaaaacaagcaatatcaagaaatatttctttttc 33643253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 206 - 504
Target Start/End: Original strand, 33305616 - 33305911
Alignment:
Q  206 atttccaaacagcaactttaccattttctcaatgataacattgtagagttgttttttggaccacaccctgctccactttctttgctctttgcttgaattt 305  Q
    ||||| ||||||  |||||||||| ||||| |  ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33305616 atttctaaacagttactttaccatattctccaccataacattgtagagttgctttttggaccagaccctgctccactttctttgctctttgcttgaattt 33305715  T
Q  306 tctcgcacaatttttctgcctagctctttcaacaaagaatgcatttcaattctctttgaatgatcaatgcttataagtgatttatcaatgagaattctta 405  Q
    ||| |||||||||||||||||||||||| |||||||||||| |||||||   | | ||||| || | || ||||||||||||||||| |||||| |||||    
T  33305716 tcttgcacaatttttctgcctagctcttccaacaaagaatgtatttcaa---tatgtgaataattagtgtttataagtgatttatcattgagaactctta 33305812  T
Q  406 atccaatatcagcatgaaatccacaacaatttagaatgtttttaactattttctcgggccaagagttgaaaaaacaagcaatatcaagaaatatttctt 504  Q
    |||||||||||||||| |||||||||||||||||||||||||||||   || |  ||||||||||||||| ||||||||||||||||||||||||||||    
T  33305813 atccaatatcagcatggaatccacaacaatttagaatgtttttaacctcttccatgggccaagagttgaagaaacaagcaatatcaagaaatatttctt 33305911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 242 - 508
Target Start/End: Original strand, 9167937 - 9168200
Alignment:
Q  242 aacattgtagagttgttttttggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttctgcctagctctttcaacaaa 341  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||  ||||||    
T  9167937 aacattgtagagttgttttttggaccacaacctgctccattttctttgctctttgcttgaattttcttgcacaatttttctgcccagctcttctaacaaa 9168036  T
Q  342 gaatgcatttcaattctctttgaatgatcaatgcttataagtgatttatcaatgagaattcttaatccaatatcagcatgaaatccacaacaatttagaa 441  Q
     ||||||||| ||   ||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  9168037 taatgcattttaa---tctctgaataattaatgcttataagtgatttatcaatgagaactcttaatccaatatcaacataaaatccacaacaatttagaa 9168133  T
Q  442 tgtttttaactattttctcgggccaagagttgaaaaaacaagcaatatcaagaaatatttctttttc 508  Q
    |||| |||||    ||||||| |||||||||||||||||||||||||| |||||||||||| |||||    
T  9168134 tgttgttaacatagttctcggaccaagagttgaaaaaacaagcaatatgaagaaatatttccttttc 9168200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 222 - 508
Target Start/End: Original strand, 33389215 - 33389501
Alignment:
Q  222 tttaccattttctcaatgataacattgtagagttgttttttggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttc 321  Q
    |||||||||||||| ||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33389215 tttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttc 33389314  T
Q  322 tgcctagctctttcaacaaagaatgcatttcaattctctttgaat---gatcaatgcttataagtgatttatcaatgagaattcttaatccaatatcagc 418  Q
    ||||||||||   ||| ||||||||||||||||   ||  |||||    || ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33389315 tgcctagctcaaccaataaagaatgcatttcaa---tcactgaatcactattaatgcttataagtgatttatcaatgagaactcttaatccaatatcagc 33389411  T
Q  419 atgaaatccacaacaatttagaatgtttttaactattttctcgggccaagagttgaaaaaacaagcaatatcaagaaatatttctttttc 508  Q
    |||||||||||||  |||||||| |||||| ||   |||||| |       |||||||||||||||||||||||||||||||||||||||    
T  33389412 atgaaatccacaatgatttagaacgttttttacatatttctctgattcgcggttgaaaaaacaagcaatatcaagaaatatttctttttc 33389501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 321 - 516
Target Start/End: Complemental strand, 28869609 - 28869414
Alignment:
Q  321 ctgcctagctctttcaacaaagaatgcatttcaattctctttgaatgatcaatgcttataagtgatttatcaatgagaattcttaatccaatatcagcat 420  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||    
T  28869609 ctgcctagctctttcaacaaagaatgcatttcaatcctcgttgaatgatcaatgcttataagggatttatcaatgagaacttttaatccaatatcagcat 28869510  T
Q  421 gaaatccacaacaatttagaatgtttttaactattttctcgggccaagagttgaaaaaacaagcaatatcaagaaatatttctttttctgtatgat 516  Q
    |||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| ||||||||||||||| ||||||||| |||||||    
T  28869509 gaaacccacaacaatttagaatgtttttaactcttttctcggtccaagagttgaaaaagcaaacaatatcaagaaataattctttttcagtatgat 28869414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 222 - 514
Target Start/End: Original strand, 33272938 - 33273227
Alignment:
Q  222 tttaccattttctcaatgataacattgtagagttgttttttggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttc 321  Q
    |||||||||||||| ||  ||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  33272938 tttaccattttctccatcgtaacattgttgagttgtttttcggaccacaccctgctccactttcttcgctctttgcttgaattttcttgcacaatttttc 33273037  T
Q  322 tgcctagctctttcaacaaagaatgcatttcaattctctttgaatgatcaatgcttataagtgatttatcaatgagaattcttaatccaatatcagcatg 421  Q
    |||| ||||||| ||||||||||||||||  ||||    |||| | | ||| ||||||||||||||||||| ||||||  ||||||||||| ||||||||    
T  33273038 tgcccagctcttccaacaaagaatgcattataatt---gttgactcaccaaggcttataagtgatttatcattgagaacacttaatccaatgtcagcatg 33273134  T
Q  422 aaatccacaacaatttagaatgtttttaactattttctcgggccaagagttgaaaaaacaagcaatatcaagaaatatttctttttctgtatg 514  Q
    ||| ||||||||||||||||||||||||||   || ||  |  |   || |||||||||||||||||| |||||||||||||||||| |||||    
T  33273135 aaaaccacaacaatttagaatgtttttaacatattccttcgaactgtagctgaaaaaacaagcaatatgaagaaatatttctttttcagtatg 33273227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 223 - 508
Target Start/End: Original strand, 33401761 - 33402043
Alignment:
Q  223 ttaccattttctcaatgataacattgtagagttgttttttggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttct 322  Q
    ||||||| ||||| ||  |||||| |||||||||||||   ||||||| ||||||||| |||||| |||||||||||||| ||| | |||||||||||||    
T  33401761 ttaccatattctccatcttaacatcgtagagttgttttgcagaccacaacctgctccattttcttggctctttgcttgaagttttttgcacaatttttct 33401860  T
Q  323 gcctagctctttcaacaaagaatgcatttcaattctctttgaatgatcaatgcttataagtgatttatcaatgagaattcttaatccaatatcagcatga 422  Q
    ||||||||||||||||||||||||||||||||   | |||  |  || ||||||||||||||||||||||||||||| ||||| |||||||||||||| |    
T  33401861 gcctagctctttcaacaaagaatgcatttcaa---tattttgaccattaatgcttataagtgatttatcaatgagaactcttattccaatatcagcatta 33401957  T
Q  423 aatccacaacaatttagaatgtttttaactattttctcgggcca-agagttgaaaaaacaagcaatatcaagaaatatttctttttc 508  Q
    ||||||||||||||||||||||||||||| || |||   | ||| | | ||||||| ||||||||||||||||||||||| ||||||    
T  33401958 aatccacaacaatttagaatgtttttaac-atattccatgtccagacaattgaaaagacaagcaatatcaagaaatatttgtttttc 33402043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 212 - 508
Target Start/End: Original strand, 33286678 - 33286971
Alignment:
Q  212 aaacagcaactttaccattttctcaatgataacattgtagagttgttttttggaccacaccctgctccactttctttgctctttgcttgaattttctcgc 311  Q
    ||||| |||||||||||| ||||| |  ||||||||||||||||||| | ||||||||| ||||||||| |||||| |||||||||||||| | | | ||    
T  33286678 aaacaacaactttaccatattctccaacataacattgtagagttgttctgtggaccacaacctgctccattttcttggctctttgcttgaactattttgc 33286777  T
Q  312 acaatttttctgcctagctctttcaacaaagaatgcatttcaattctctttgaatgatcaatgcttataagtgatttatcaatgagaattcttaatccaa 411  Q
    |||||||||||||||||||||| ||||||||||||||||||||     |||  |  || |||| | ||||||||||||||||| |||| |||||||||||    
T  33286778 acaatttttctgcctagctcttccaacaaagaatgcatttcaa---gattttgaccattaatgttcataagtgatttatcaataagaactcttaatccaa 33286874  T
Q  412 tatcagcatgaaatccacaacaatttagaatgtttttaac-tattttctcgggccaagagttgaaaaaacaagcaatatcaagaaatatttctttttc 508  Q
    ||||||||||||||| |||||||||||||||||||||| | |||||| || |       |||||||||||||||||||||||||||||||||||||||    
T  33286875 tatcagcatgaaatctacaacaatttagaatgtttttagcatatttt-tccgatttgcggttgaaaaaacaagcaatatcaagaaatatttctttttc 33286971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 220 - 508
Target Start/End: Original strand, 33263793 - 33264078
Alignment:
Q  220 actttaccattttctcaatgataacattgtagagttgttttttggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttt 319  Q
    |||||||||| ||||| ||  |||||||||||| |||||||  |||||||| ||| ||||| |||||| ||||||||| |||| | | | ||||||||||    
T  33263793 actttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcatgaactattttgcacaatttt 33263892  T
Q  320 tctgcctagctctttcaacaaagaatgcatttcaattctctttgaatgatcaatgcttataagtgatttatcaatgagaattcttaatccaatatcagca 419  Q
    || ||||||||||| ||||||||||||||||  ||||||   ||||| |  ||||||||||||||||||| |||||||||  ||||||||||||||||||    
T  33263893 tcggcctagctcttgcaacaaagaatgcattataattct---tgaattactaatgcttataagtgatttagcaatgagaacacttaatccaatatcagca 33263989  T
Q  420 tgaaatccacaacaatttagaatgtttttaactattttctcgggccaagagttgaaaaaacaagcaatatcaagaaatatttctttttc 508  Q
    ||||||||||||||||||| ||||||||||||   ||||||   || | || |  |||||||||||||||| |||||||||||||||||    
T  33263990 tgaaatccacaacaatttaaaatgtttttaacatatttctcattccgaaaggttgaaaaacaagcaatatcgagaaatatttctttttc 33264078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 206 - 508
Target Start/End: Original strand, 33058693 - 33058992
Alignment:
Q  206 atttccaaacagcaactttaccattttctcaatgataacattgtagagttgttttttggaccacaccctgctccactttctttgctctttgcttgaattt 305  Q
    ||||| |||||  ||||||||||| ||||| |  ||||||| ||||||||||| | ||||||||| ||||||||| |||||| | |||||||||||| |     
T  33058693 atttcaaaacattaactttaccatattctccaacataacatcgtagagttgttctgtggaccacaacctgctccattttcttggttctttgcttgaacta 33058792  T
Q  306 tctcgcacaatttttctgcctagctctttcaacaaagaatgcatttcaattctctttgaatgatcaatgcttataagtgatttatcaatgagaattctta 405  Q
    | | |||||||||||||||||||||||| ||||||||||||||| | |||  |   ||||| |  |||||||| |||||||||||||||||||| |||||    
T  33058793 ttttgcacaatttttctgcctagctcttccaacaaagaatgcatgttaataat---tgaataactaatgcttacaagtgatttatcaatgagaactctta 33058889  T
Q  406 atccaatatcagcatgaaatccacaacaatttagaatgtttttaactattttctcgggccaagagttgaaaaaacaagcaatatcaagaaatatttcttt 505  Q
    |||||||||||||||||||||||||||| |||||||||||||||||   || ||| |       |||||||||||||||||||| ||||||||| |||||    
T  33058890 atccaatatcagcatgaaatccacaacagtttagaatgtttttaacatcttcctccgaatcgttgttgaaaaaacaagcaatatgaagaaatatgtcttt 33058989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 33388986 - 33389098
Alignment:
Q  16 ttgatgatgagcaatctaagattactcatttttgataagtctccaacgttcaaaacgacgtcttcaacatgtttttcattcaaaacgatggcttcaacat 115  Q
    ||||||||||| ||||||||||||||||||||||| || | | |||||| ||      | ||||||||||  |  ||||||||||| |||||||||||||    
T  33388986 ttgatgatgagtaatctaagattactcatttttgacaactgttcaacgtcca------cctcttcaacatcatcatcattcaaaactatggcttcaacat 33389079  T
Q  116 gtttttcctaaagcattgc 134  Q
    |  ||||||||||||||||    
T  33389080 gcctttcctaaagcattgc 33389098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 33286491 - 33286599
Alignment:
Q  17 tgatgatgagcaatctaagattactcatttttgataagtctccaacgttcaaaacgacgtcttcaacatgtttttcattcaaaacgatggcttcaacatg 116  Q
    |||||||||||||||||||||||||||||||||| |||| | |||| |||||  | || ||||||         ||||||||||| | ||||| ||||||    
T  33286491 tgatgatgagcaatctaagattactcatttttgacaagtgttcaacattcaatccaacctcttca---------tcattcaaaactaaggctttaacatg 33286581  T
Q  117 tttttcctaaagcattgc 134  Q
     |||||||||||||||||    
T  33286582 cttttcctaaagcattgc 33286599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 33410916 - 33410965
Alignment:
Q  18 gatgatgagcaatctaagattactcatttttgataagtctccaacgttca 67  Q
    ||||||||||||||||||||||||||||||||| |||| | |||||||||    
T  33410916 gatgatgagcaatctaagattactcatttttgaaaagtgttcaacgttca 33410965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 9167705 - 9167755
Alignment:
Q  16 ttgatgatgagcaatctaagattactcatttttgataagtctccaacgttc 66  Q
    ||||||||||||||||||||| ||||||||||||| |||| | ||||||||    
T  9167705 ttgatgatgagcaatctaagactactcatttttgacaagtgttcaacgttc 9167755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 31561935 - 31561902
Alignment:
Q  17 tgatgatgagcaatctaagattactcatttttga 50  Q
    ||||||||||||||||||||||||||||||||||    
T  31561935 tgatgatgagcaatctaagattactcatttttga 31561902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 33263583 - 33263616
Alignment:
Q  17 tgatgatgagcaatctaagattactcatttttga 50  Q
    ||||||||||||||||||||||||||||||||||    
T  33263583 tgatgatgagcaatctaagattactcatttttga 33263616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 33305490 - 33305534
Alignment:
Q  90 ttcattcaaaacgatggcttcaacatgtttttcctaaagcattgc 134  Q
    |||||||||||| |||||||| |||||||||| ||||||||||||    
T  33305490 ttcattcaaaactatggcttcgacatgtttttgctaaagcattgc 33305534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 33359654 - 33359693
Alignment:
Q  16 ttgatgatgagcaatctaagattactcatttttgataagt 55  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  33359654 ttgatgatgagcactctaagattactcatttttgacaagt 33359693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 33359721 - 33359760
Alignment:
Q  95 tcaaaacgatggcttcaacatgtttttcctaaagcattgc 134  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  33359721 tcaaaactatggcttcaacatgtttttcctaaagtattgc 33359760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 33401565 - 33401604
Alignment:
Q  16 ttgatgatgagcaatctaagattactcatttttgataagt 55  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  33401565 ttgatgatgagaagtctaagattactcatttttgataagt 33401604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 33058585 - 33058623
Alignment:
Q  96 caaaacgatggcttcaacatgtttttcctaaagcattgc 134  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  33058585 caaaactatggcttcaacatgcttttcctaaagcattgc 33058623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 33272744 - 33272777
Alignment:
Q  16 ttgatgatgagcaatctaagattactcatttttg 49  Q
    ||||| ||||||||||||||||||||||||||||    
T  33272744 ttgattatgagcaatctaagattactcatttttg 33272777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 33643673 - 33643636
Alignment:
Q  96 caaaacgatggcttcaacatgtttttcctaaagcattg 133  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  33643673 caaaactatggcttcaacatgcttttcctaaagcattg 33643636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 33643744 - 33643708
Alignment:
Q  19 atgatgagcaatctaagattactcatttttgataagt 55  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  33643744 atgatcagcaatctaagattactcatttttgacaagt 33643708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 223 - 508
Target Start/End: Original strand, 7907 - 8189
Alignment:
Q  223 ttaccattttctcaatgataacattgtagagttgttttttggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttct 322  Q
    ||||||| ||||| ||  |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7907 ttaccatattctccatcgtaacattgtagagttgttgtttggaccacatcctgctccactttctttgctctttgcttgaattttcttgcacaatttttct 8006  T
Q  323 gcctagctctttcaacaaagaatgcatttcaattctctttgaatgatcaatgcttataagtgatttatcaatgagaattcttaatccaatatcagcatga 422  Q
    ||||| ||||| ||||||||||||||||||||      |||||  || |||| |||| ||||||||||||||||||| | | |||||||||||||| |||    
T  8007 gcctaactcttccaacaaagaatgcatttcaa---caattgaaccatgaatggttattagtgatttatcaatgagaactataaatccaatatcagcgtga 8103  T
Q  423 aatccacaacaatttagaatgtttttaactattttctcgggccaagagttgaaaaaacaagcaatatcaagaaatatttctttttc 508  Q
    ||||||||||||||||||||||||||||  ||||||||   || ||||||||||||||||||||||||||||||||||||||||||    
T  8104 aatccacaacaatttagaatgtttttaataattttctcattccgagagttgaaaaaacaagcaatatcaagaaatatttctttttc 8189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 206 - 514
Target Start/End: Complemental strand, 17439778 - 17439473
Alignment:
Q  206 atttccaaacagcaactttaccattttctcaatgataacattgtagagttgttttttggaccacaccctgctccactttctttgctctttgcttgaattt 305  Q
    ||||| ||||| |||||||||||||||| | || |||||||  |||||||||| | | ||||||| ||||||||| |||||| | || ||||||||| |     
T  17439778 atttctaaacaacaactttaccattttcgccataataacatcatagagttgttctgtagaccacaacctgctccattttcttgggtcattgcttgaacta 17439679  T
Q  306 tctcgcacaatttttctgcctagctctttcaacaaagaatgcatttcaattctctttgaatgatcaatgcttataagtgatttatcaatgagaattctta 405  Q
    | | |||||||||||||||| ||||||| |||||||||||||||||||||    |||  |  || |||||||||||||||||||| |||||||| |||||    
T  17439678 ttttgcacaatttttctgcccagctcttccaacaaagaatgcatttcaatg---ttttgaccattaatgcttataagtgatttattaatgagaactctta 17439582  T
Q  406 atccaatatcagcatgaaatccacaacaatttagaatgtttttaactattttctcgggccaagagttgaaaaaacaagcaatatcaagaaatatttcttt 505  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||   ||||||      |||||||||||||||||||||||||||||||||||| ||    
T  17439581 atccaatatcagcatgaaatccacaacaattaagaatgtttttaacatatttctcacattcagagttgaaaaaacaagcaatatcaagaaatatttcctt 17439482  T
Q  506 ttctgtatg 514  Q
    ||| |||||    
T  17439481 ttcagtatg 17439473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 17439896 - 17439856
Alignment:
Q  94 ttcaaaacgatggcttcaacatgtttttcctaaagcattgc 134  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  17439896 ttcaaaactatggcttcaacatgcttttcctaaagcattgc 17439856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 17439960 - 17439928
Alignment:
Q  18 gatgatgagcaatctaagattactcatttttga 50  Q
    |||||||||||||||||||||||||||||||||    
T  17439960 gatgatgagcaatctaagattactcatttttga 17439928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 220 - 508
Target Start/End: Complemental strand, 31503051 - 31502745
Alignment:
Q  220 actttaccattttctcaatgataacattgtagagttgttttttggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttt 319  Q
    |||||||||||||||| |  || ||||||| || |||| |||   |||||| |||||||||||||||| |||||||||||||||||||| | ||||||||    
T  31503051 actttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaattttcttgaacaatttt 31502952  T
Q  320 tctgcctagctctttcaacaaagaatgcatttcaatt-----ctcttt-------------gaatgatcaatgcttataagtgatttatcaatgagaatt 401  Q
    ||| |||||||||| |||||||  |||||||  |||      ||||||             || | |||||||||||||||||||||||||||||||| |    
T  31502951 tcttcctagctcttccaacaaaccatgcattgaaatggattcctctttaaggcttgaaaatgattcatcaatgcttataagtgatttatcaatgagaact 31502852  T
Q  402 cttaatccaatatcagcatgaaatccacaacaatttagaatgtttttaactattttctcgggccaagagttgaaaaaacaagcaatatcaagaaatattt 501  Q
    |||||||| |||||||||||||||||||||||||||||||  ||||||||   ||||||    |  |  ||||||||||||||||||| |||||||||||    
T  31502851 cttaatcctatatcagcatgaaatccacaacaatttagaacatttttaacatatttctccatgctcggattgaaaaaacaagcaatatgaagaaatattt 31502752  T
Q  502 ctttttc 508  Q
    | |||||    
T  31502751 ccttttc 31502745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 223 - 508
Target Start/End: Complemental strand, 31477907 - 31477622
Alignment:
Q  223 ttaccattttctcaatgataacattgtagagttgttttttggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttct 322  Q
    ||||||||||||| |  || |||| || || |||||||  | |||| | ||| ||||| ||||||||||||||||||||||||||| | ||||||| |||    
T  31477907 ttaccattttctccaacatgacatcgttgacttgttttacgaaccatatcctcctccagtttctttgctctttgcttgaattttcttgaacaatttctct 31477808  T
Q  323 gcctagctctttcaacaaagaatgcatttcaat---tctctttgaatgatcaatgcttataagtgatttatcaatgagaattcttaatccaatatcagca 419  Q
     |||||||||| |||||||  |||||| | |||   ||  | || ||   |||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  31477807 ccctagctcttccaacaaaccatgcatgtgaataaatccatctgcat---caatgcttataagtgatttatcaatgagaactcttaatccaatatcggca 31477711  T
Q  420 tgaaatccacaacaatttagaatgtttttaa-ctattttctcgggccaagagttgaaaaaacaagcaatatcaagaaatatttctttttc 508  Q
    ||||||||||||||||||| ||  |||||||  ||||| | |    |  || ||||||||||||||||||| ||||||||||||||||||    
T  31477710 tgaaatccacaacaatttaaaacatttttaagatatttcccccaaacttga-ttgaaaaaacaagcaatatgaagaaatatttctttttc 31477622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 206 - 451
Target Start/End: Complemental strand, 31497870 - 31497632
Alignment:
Q  206 atttccaaacagcaactttaccattttctcaatgataacattgtagagttgttttttggaccacaccctgctccactttctttgctctttgcttgaattt 305  Q
    |||||||| || | |||||||||| ||||| |  ||||||| ||||| ||||| |||  |||||| ||||||||||||||||  ||| ||||||||||||    
T  31497870 atttccaagcaactactttaccatattctccaacataacatcgtagaattgttctttcaaccacaacctgctccactttcttctctccttgcttgaattt 31497771  T
Q  306 tctcgcacaatttttctgcctagctctttcaacaaagaatgcatttcaattctctttgaatgatcaatgcttataagtgatttatcaatgagaattctta 405  Q
    ||| | ||||| ||||||||||| |||| ||||| |  |||||||| || |||||     |  |||||||| | |||||||||||||||||||| |||||    
T  31497770 tcttgaacaatatttctgcctagttcttgcaacatatcatgcatttgaa-tctct-----tcctcaatgctcacaagtgatttatcaatgagaactctta 31497677  T
Q  406 atccaatatcagcatgaaatccacaacaatttagaatgtttttaac 451  Q
    |||| |||| | ||||||||||||||| ||||||||  ||||||||    
T  31497676 atccgatatgaacatgaaatccacaac-atttagaacatttttaac 31497632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 277 - 436
Target Start/End: Original strand, 31527601 - 31527760
Alignment:
Q  277 tccactttctttgctctttgcttgaattttctcgcacaatttttctgcctagctctttcaacaaagaatgcatttcaattctc--tttgaatgatcaatg 374  Q
    |||||||||||   |||||||||||||||||| | ||||||||| |||| |||||||  ||||||  ||||||||||||  |   |||   ||||  |||    
T  31527601 tccactttcttgaatctttgcttgaattttcttgaacaatttttttgcccagctcttctaacaaaccatgcatttcaatcttacttttttctgat--atg 31527698  T
Q  375 cttataagtgatttatcaatgagaattcttaatccaatatcagcatgaaatccacaacaatt 436  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  31527699 cttataagtgatttgtcaatgagaactcttaatccaatatcagcatgaaatccacaacaatt 31527760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 266 - 451
Target Start/End: Original strand, 31149529 - 31149714
Alignment:
Q  266 ccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttctgcctagctctttcaacaaagaatgcatttcaattctctttgaa 365  Q
    ||||| ||||||||||||||||  ||||||| |||| |||||| | |||||||||||||| ||||||| |||||||   || ||||||||  | |||       
T  31149529 ccacatcctgctccactttcttgactctttgattgatttttcttgaacaatttttctgccaagctcttgcaacaaacggtgtatttcaatattattttc- 31149627  T
Q  366 tgatcaa-tgcttataagtgatttatcaatgagaattcttaatccaatatcagcatgaaatccacaacaatttagaatgtttttaac 451  Q
    || | || |||||||||  ||||||||||| ||||  |||||||||||||||||||||||||||||||| |||||||  ||||||||    
T  31149628 tgttgaaatgcttataacggatttatcaattagaacccttaatccaatatcagcatgaaatccacaacagtttagaacatttttaac 31149714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 371 - 508
Target Start/End: Original strand, 31028967 - 31029104
Alignment:
Q  371 aatgcttataagtgatttatcaatgagaattcttaatccaatatcagcatgaaatccacaacaatttagaatgtttttaactattttctcgggccaagag 470  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| ||| ||||   || || |    |        
T  31028967 aatgcttataagggatttatcaatgagaattcttaatccgatatcagcatgaaacccacgacaatttagaatatttgtaacacattccttgttgtaccct 31029066  T
Q  471 ttgaaaaaacaagcaatatcaagaaatatttctttttc 508  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  31029067 ttgaaaaaacaagcaatatcaagaaatatatctttttc 31029104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 441
Target Start/End: Original strand, 31158430 - 31158605
Alignment:
Q  266 ccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttctgcctagctctttcaacaaagaatgcatttcaattctctttgaa 365  Q
    ||||||||| |||||| |||||   |||||| |||| |||||| | ||||||| |||||| |  ||||| ||||||  ||||||||||||  | |||       
T  31158430 ccacaccctactccaccttcttgaatctttgattgacttttcttggacaatttctctgcccaattcttttaacaaactatgcatttcaatattattttcc 31158529  T
Q  366 tgatcaatgcttataagtgatttatcaatgagaattcttaatccaatatcagcatgaaatccacaacaatttagaa 441  Q
    |    |||||||| ||||||||||||||| |||| ||||||||||||||||||||| |||||||| ||||||||||    
T  31158530 tctgaaatgcttagaagtgatttatcaattagaactcttaatccaatatcagcatggaatccacagcaatttagaa 31158605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 451
Target Start/End: Complemental strand, 31483689 - 31483536
Alignment:
Q  298 ttgaattttctcgcacaatttttctgcctagctctttcaacaaagaatgcatttcaattctctttgaatgatcaatgcttataagtgatttatcaatgag 397  Q
    ||||||||||| | |||||| ||||||| |||||||  |||| |  ||||||||||||  | |||  ||    ||| |||||||||||||||||||  ||    
T  31483689 ttgaattttcttgaacaattcttctgcccagctcttcaaacacaccatgcatttcaatcttattttcatctgaaattcttataagtgatttatcaacaag 31483590  T
Q  398 aattcttaatccaatatcagcatgaaatccacaacaatttagaatgtttttaac 451  Q
    || ||||||||||||||||| |||||||||||||||||||| ||  ||||||||    
T  31483589 aactcttaatccaatatcaggatgaaatccacaacaatttaaaacatttttaac 31483536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 374 - 442
Target Start/End: Original strand, 31019089 - 31019157
Alignment:
Q  374 gcttataagtgatttatcaatgagaattcttaatccaatatcagcatgaaatccacaacaatttagaat 442  Q
    ||||||||| ||||||||||| |||||||||||||| ||||| | ||||||||||||||||||||||||    
T  31019089 gcttataagggatttatcaataagaattcttaatccgatatctggatgaaatccacaacaatttagaat 31019157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 473 - 508
Target Start/End: Original strand, 31019188 - 31019223
Alignment:
Q  473 gaaaaaacaagcaatatcaagaaatatttctttttc 508  Q
    ||||||||||||||||||||||||||||||||||||    
T  31019188 gaaaaaacaagcaatatcaagaaatatttctttttc 31019223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 508
Target Start/End: Original strand, 31158636 - 31158672
Alignment:
Q  472 tgaaaaaacaagcaatatcaagaaatatttctttttc 508  Q
    |||||||||||||||| ||||||||||||||||||||    
T  31158636 tgaaaaaacaagcaatgtcaagaaatatttctttttc 31158672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 431
Target Start/End: Complemental strand, 31490450 - 31490400
Alignment:
Q  381 agtgatttatcaatgagaattcttaatccaatatcagcatgaaatccacaa 431  Q
    ||||| |||||||  |||| ||||||||| |||||||||||||||||||||    
T  31490450 agtgagttatcaacaagaactcttaatcctatatcagcatgaaatccacaa 31490400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 31478029 - 31477988
Alignment:
Q  93 attcaaaacgatggcttcaacatgtttttcctaaagcattgc 134  Q
    ||||||||| |||||||||||||  |||||||||||||||||    
T  31478029 attcaaaactatggcttcaacattcttttcctaaagcattgc 31477988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 31483880 - 31483839
Alignment:
Q  92 cattcaaaacgatggcttcaacatgtttttcctaaagcattg 133  Q
    |||||||||| |||||||||||||  ||||||||||||||||    
T  31483880 cattcaaaactatggcttcaacattcttttcctaaagcattg 31483839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 508
Target Start/End: Original strand, 31527795 - 31527832
Alignment:
Q  471 ttgaaaaaacaagcaatatcaagaaatatttctttttc 508  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  31527795 ttgaaaaaacatgcaatatcgagaaatatttctttttc 31527832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University