View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21063_high_5 (Length: 515)
Name: NF21063_high_5
Description: NF21063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21063_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 197 - 506
Target Start/End: Original strand, 36945922 - 36946236
Alignment:
| Q |
197 |
aggaagacttttcttaagatgaatggataatttgtggcaatgtaactt------cgtgtgataatatttctagcaccttatttctgaacacaggtctgaa |
290 |
Q |
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| T |
36945922 |
aggaagatttttcttaagatcgatagataatttgtagctatgtaactttgcaatcgtgtgataatatttctcgagctttatttctgaacacaggtcagaa |
36946021 |
T |
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| Q |
291 |
ctatgcaatcctaaggcatctgcaacaccacttacttatgttgacactgaggacatctgtggaaggcctttgggactcagactttgacaagaaaactggt |
390 |
Q |
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| T |
36946022 |
ctatgcaatctaaaggcatctgcaacaccacttagttatgttgaaactgaggacatctgtggaaggcctttgggactcaga-tttgacaagaaaactggt |
36946120 |
T |
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| Q |
391 |
gatttatacattgcagatgcatattttgggctgatgaaggtggggcctcaaggtggtttcataacatctcttgcaaccgaggcagaaggagtaccgttta |
490 |
Q |
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| T |
36946121 |
gatttatacatagcagatgcatatttcgggcttatgaaggtggggcctcaaggtggtttcgcaacatctcttgcaaccgaagcagaaggagtaccattta |
36946220 |
T |
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| Q |
491 |
gatttactgatgatgt |
506 |
Q |
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| T |
36946221 |
gatttactaatgatgt |
36946236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 36945718 - 36945922
Alignment:
| Q |
11 |
ataaatgtggctaaaagctactatagtacttagtcatagttctattcctaacttaatgttggaaaactgctacatgcagactttttacctcacaggctaa |
110 |
Q |
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| T |
36945718 |
ataaatgtggctaaaagctactatagtactt----------ctattcctaacttaatgttggaaaactgcttcgtgcagactttttacctcataggctca |
36945807 |
T |
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| Q |
111 |
tactagtggtaaagatctcatgctcttgcaccgatctgtgtaaaagttacagaaaatatgtgtgaaattctgctacattgcatctgaggaagacttttct |
210 |
Q |
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| T |
36945808 |
ta-tactagtaaagatctcatgctcttgcagcgatctgccaaaaaattacagaaaatacatgtgaaagtctgctacattgcatccggggaagatttttct |
36945906 |
T |
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| Q |
211 |
taagatgaatggataa |
226 |
Q |
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| T |
36945907 |
taagatgaatagataa |
36945922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 315 - 479
Target Start/End: Complemental strand, 17768993 - 17768830
Alignment:
| Q |
315 |
acaccacttacttatgttgacactgaggacatctgtggaaggcctttgggactcagactttgacaagaaaactggtgatttatacattgcagatgcatat |
414 |
Q |
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| T |
17768993 |
acaccatttagttatgtgaagactgagcacatatgtggaaggcctttgggactcaga-ttcgacaagaaaacaggtgaattgtacattgcagatgcatat |
17768895 |
T |
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| Q |
415 |
tttgggctgatgaaggtggggcctcaaggtggtttcataacatctcttgcaaccgaggcagaagg |
479 |
Q |
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| T |
17768894 |
cttgggctgttgaaggtggggcccgagggaggtttagcaacatctcttgcaactgaggctgaagg |
17768830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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