View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21063_low_10 (Length: 406)
Name: NF21063_low_10
Description: NF21063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21063_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 389
Target Start/End: Complemental strand, 34689723 - 34689336
Alignment:
| Q |
16 |
aatatcttcaatcatttcctaatgtacatcactacattcttgcaattaaattatcaaacaaattaaaaattatctaacatattcattt------------ |
103 |
Q |
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| T |
34689723 |
aatatcttcaatcatttcctaatgtacatcactacattcttgcaattaaattatcaaacaaattaaaaattatctaacatattcattttacagtgtttca |
34689624 |
T |
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| Q |
104 |
---catatgatatttatttattagctaacaaatctaaaattcttgcaattaaattatctgataattcgtagtgtttcagggattgtaggcagctcataaa |
200 |
Q |
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| T |
34689623 |
tttcatatgataattatttattagctaacaaatctaaaattcttgcgattaaattatttg-taattcgtagtgtttcagggattgtaggcagctcataaa |
34689525 |
T |
|
| Q |
201 |
gtgcaccactacatttctttccatgcttttaacaaattctgaatatttgaatccactgattctctcattcattgcagtatagtatgcttgtattcaaacc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
34689524 |
gtgcaccactacatttctttccatgcttttaacaaattctgaatatttgaatccactgattctctcattcattgcagtataatatgcttatattcaaacc |
34689425 |
T |
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| Q |
301 |
agaagaattctcctagaatagtgcttgatatatatcgtgaacttatttctacgggaagcgaattaaatatggatttttagattaagaat |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
34689424 |
agaagaattctcctagaatagtgcttgatatatatcgtgaacttatttctcccggaagcgaattaaatatggatttttagattaagaat |
34689336 |
T |
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