View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21063_low_12 (Length: 380)
Name: NF21063_low_12
Description: NF21063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21063_low_12 |
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| [»] scaffold0047 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 30169484 - 30169149
Alignment:
| Q |
20 |
cttggataattgatgttatttatctacttctgtgcaggtcattctgattctgtatctagtttagcttttagctatgatgggaagtttcttgcatctggaa |
119 |
Q |
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| T |
30169484 |
cttggataattgatgttatttatctacttctgtgcaggtcattctgattctgtatctagtttagcttttagctatgatgggaagtttcttgcatctggaa |
30169385 |
T |
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| Q |
120 |
gcatggatggaattgttcaagtttgggatgtatatggaaatttgagtagtgtgcttaatggtcctaatggtggcattgaggtaaaatgagattcttaact |
219 |
Q |
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| T |
30169384 |
gcatggatggaattgttcaagtttgggatgtatatggaaatttgagtagtgtgcttaatggtcctaatggtggcattgaggtaaaatgagattcttaact |
30169285 |
T |
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| Q |
220 |
ttcccatgaaatctttcactttcagtggctcagatggaatccgagagatggtggtagtgtgacctgcggtgatttcacccctgatggtactaatttctct |
319 |
Q |
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| T |
30169284 |
ttcccatgaaatctttcactt--------tcagatggaatccgagagatggtggtagtgtgacctgcggtgatttcacccctcatggtactaatt--tct |
30169195 |
T |
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| Q |
320 |
cttcatattttcttgatgcatcttcctttatctattattatctgtg |
365 |
Q |
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| T |
30169194 |
cttcatattttcttgatgcatcttcctttatctattattatctgtg |
30169149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 27744386 - 27744301
Alignment:
| Q |
71 |
gtatctagtttagcttttagctatgatgggaagtttcttgcatctggaagcatggatggaattgttcaagtttgggatgtatatgg |
156 |
Q |
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| T |
27744386 |
gtatctagtttagcttttagctacgatggacagtttcttgcatcaggaagcatcgatagggttgtttaagtctaagatgtatatgg |
27744301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 27744204 - 27744172
Alignment:
| Q |
223 |
ccatgaaatctttcactttcagtggctcagatg |
255 |
Q |
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| T |
27744204 |
ccatgaactctttcactttcagtggctcagatg |
27744172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 354
Target Start/End: Complemental strand, 56114 - 56028
Alignment:
| Q |
267 |
atggtggtagtgtgacctgcggtgatttcacccctgatggtactaatttctctcttcatattttct---tgatgcatcttcctttatctat |
354 |
Q |
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| T |
56114 |
atggtgttagtgtgacctctggtgatttca-ccctgatggtactaat---tcccttcatattttcttcgtgttgcatcttcctttatctat |
56028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 56318 - 56274
Alignment:
| Q |
177 |
atggtcctaatggtggcattgaggtaaaatgagattcttaacttt |
221 |
Q |
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| T |
56318 |
atggtcctaaaggtgccatagaggtaaagtgagattcttaacttt |
56274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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