View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21063_low_14 (Length: 343)
Name: NF21063_low_14
Description: NF21063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21063_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 12139118 - 12138975
Alignment:
| Q |
20 |
agtcaaacaggttgccattggttttgtttggaattgcagttgagacaaaaaatgattgatgacttattatattatactgtgaactacacct-cccatttt |
118 |
Q |
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| T |
12139118 |
agtcaaacaggttgccattggttttgtttggaattgcagttgagacaaaaaatgattaatgacttattatattatattgtgaactacacctccccattct |
12139019 |
T |
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| Q |
119 |
taaaaaattattatccacaccacaaaaccctcacacaaaaaaca |
162 |
Q |
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|||||||| | |||||||||||||||| || ||||||||||||| |
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| T |
12139018 |
taaaaaataactatccacaccacaaaatccacacacaaaaaaca |
12138975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 41466284 - 41466426
Alignment:
| Q |
20 |
agtcaaacaggttgccattggttttgtttggaattgcagttgagacaaaaaatgattgatgacttattatattatactgtgaactacacctcccattttt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| |
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| T |
41466284 |
agtcaaacaggttgccattggttttgtttggaattgcagctgagacaaaaaatgattaataacttattatattatattgtgaactacacctcccattttt |
41466383 |
T |
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| Q |
120 |
aaaaaattattatccacaccacaaaaccctcacacaaaaaaca |
162 |
Q |
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| T |
41466384 |
taaaaataactatccacaccacaaaatccaaacacacaaaaca |
41466426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 21 - 162
Target Start/End: Original strand, 45320528 - 45320669
Alignment:
| Q |
21 |
gtcaaacaggttgccattggttttgtttggaattgcagttgagacaaaaaatgattgatgacttattatattatactgtgaactacacctcccattttta |
120 |
Q |
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| T |
45320528 |
gtcaaacaagttgccattggttttgtttggaattgaagctgagacaaaaaatgattaatgacttattatattatattgtgaaccacacctcccattctta |
45320627 |
T |
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| Q |
121 |
aaaaattattatccacaccacaaaaccctcacacaaaaaaca |
162 |
Q |
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|||||| | ||| |||||||||||| || ||||| |||||| |
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| T |
45320628 |
aaaaataactattcacaccacaaaatccaaacacacaaaaca |
45320669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 45320754 - 45320814
Alignment:
| Q |
270 |
tgcttgttgaagaaaggcttgttatctac---cttctctttgtaaaaaattccacaccttc |
327 |
Q |
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| T |
45320754 |
tgcttgttgaagagaggcttgttatctaccttcttctctttgtcgaaaattccacaccttc |
45320814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 41466518 - 41466576
Alignment:
| Q |
272 |
cttgttgaagaaaggcttgttatctac---cttctctttgtaaaaaattccacaccttc |
327 |
Q |
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| T |
41466518 |
cttgttgaagacaggcttgttatctaccttcttctctttgtcgaaaattccacaccttc |
41466576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 26520932 - 26520985
Alignment:
| Q |
18 |
caagtcaaacaggttgccattggttttgtttggaattgcagttgagacaaaaaa |
71 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26520932 |
caagtcaaacaggttgccattggttttgtttggaattgcacttgagacaaaaaa |
26520985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 40646934 - 40646879
Alignment:
| Q |
235 |
gaaagaaaatctcacaccttcacttgtttcctaattgcttgttgaagaaaggcttg |
290 |
Q |
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| T |
40646934 |
gaaagaaaatctcacaccttcacttgtttcctgattgcttgttgaagagaggcttg |
40646879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 34826697 - 34826626
Alignment:
| Q |
18 |
caagtcaaacaggttgccattggttttgtttggaattgcagttgagacaa-aaaatgattgatgacttatta |
88 |
Q |
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||||| |||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| |
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| T |
34826697 |
caagttaaacaggttgtcattggttttgtttggaattgcacttgagacaaaaaaatgattaatgacttatta |
34826626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 29059265 - 29059388
Alignment:
| Q |
21 |
gtcaaacaggttgccattggttttgtttggaattgcagttgagacaaaaaatgattga-tgacttattatattatactgtgaactacacctcccattttt |
119 |
Q |
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|||||||| |||| |||||||||||||||| ||| || || || |||||||| ||| | | |||||||||| || | |||||||||||||||||| ||| |
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| T |
29059265 |
gtcaaacatgttgacattggttttgtttggtatttcacttcagccaaaaaatcattaaataacttattatactaaattgtgaactacacctccca-ttta |
29059363 |
T |
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| Q |
120 |
aaaaaattattatccacaccacaaa |
144 |
Q |
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|||||| || ||||||||||||||| |
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| T |
29059364 |
aaaaaagtactatccacaccacaaa |
29059388 |
T |
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