View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21063_low_15 (Length: 324)
Name: NF21063_low_15
Description: NF21063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21063_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 6327369 - 6327074
Alignment:
| Q |
19 |
ctatggtaatcaaactccaaatcaacaacaacttctctgttttaagagtctttgtcaaccctatgagtaaagtggacattctttactggtccgcattctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6327369 |
ctatggtaatcaaactccaaatcaacaacaacttctctgttttaagagtctttgtcaaccctatgagtaaagtggacattctttactggtccgcattctt |
6327270 |
T |
|
| Q |
119 |
aaagatgaaactacaagaatcaatgctcaaaccatgtcaaggatttctcaagggtacttttggaaaaggtttaccagtcaaaggatacattgatttggac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6327269 |
gaagatgaaactacaagaatcaatgctcaaaccatgtcaaggatttctcaagggtacttttggaaaaggtttaccagtgaaaggatacattgatttggac |
6327170 |
T |
|
| Q |
219 |
acaacttttggtaaaggtgagaataccaaaaccatcaaggtcaggtacttcgtcgttgaatcgccaccgtctgtttctatttataatgttgttctt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6327169 |
acaacttttggtaaaggtgagaataccaaaaccatcaaggtcaggtacttcgtcgttgaatcgccaccgtctgtttctatttataatgttgttctt |
6327074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 6318127 - 6317832
Alignment:
| Q |
19 |
ctatggtaatcaaactccaaatcaacaacaacttctctgttttaagagtctttgtcaaccctatgagtaaagtggacattctttactggtccgcattctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6318127 |
ctatggtaatcaaactccaaatcaacaacaacttctctgttttgagagtctttgtcaaccctagcagtaaagtggacattctctactggtccgcattctt |
6318028 |
T |
|
| Q |
119 |
aaagatgaaactacaagaatcaatgctcaaaccatgtcaaggatttctcaagggtacttttggaaaaggtttaccagtcaaaggatacattgatttggac |
218 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6318027 |
gaagatgggactttcagaatcaatgctcaaaccatgtcaagcatttctcaagtatacttttggaaaaggtgtaccagtcaaaggatacattgatttggac |
6317928 |
T |
|
| Q |
219 |
acaacttttggtaaaggtgagaataccaaaaccatcaaggtcaggtacttcgtcgttgaatcgccaccgtctgtttctatttataatgttgttctt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| ||||||||||||| |
|
|
| T |
6317927 |
acaacttttggtaaaggtgagaataccaaaaccatcaaggtcaggtacttcgtcgttgagtcggcaccgtctttttctatttttaatgttgttctt |
6317832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 6310348 - 6310135
Alignment:
| Q |
19 |
ctatggtaatcaaactccaaatcaacaacaacttctctgttttaagagtctttgtcaaccctatgagtaaagtggacattctttactggtccgcattctt |
118 |
Q |
| |
|
||||||| || ||||||||||||||||||||| ||||||||||||||| ||| |||| || | | | ||||||||||||||||||||||||| |
|
|
| T |
6310348 |
ctatggttattaaactccaaatcaacaacaaca---ctgttttaagagtctctgttaaccagggaagcagcgcgaacattctttactggtccgcattctt |
6310252 |
T |
|
| Q |
119 |
aaagatgaaactacaagaatcaatgctcaaaccatgtcaaggatttctcaagggtacttttggaaaaggtttaccagtcaaaggatacattgatttggac |
218 |
Q |
| |
|
|||||| ||| |||| |||||||| ||||||| | |||||||||| |||||||||||||| | ||| | || |||||||||||| ||||||||||| |
|
|
| T |
6310251 |
gaagatgggactggaagagtcaatgctgaaaccatttgaaggatttctgaagggtacttttggcgatggtgtgccggtcaaaggatacgttgatttggac |
6310152 |
T |
|
| Q |
219 |
acaacttttggtaaagg |
235 |
Q |
| |
|
||||| || |||||||| |
|
|
| T |
6310151 |
acaacattcggtaaagg |
6310135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 272
Target Start/End: Complemental strand, 6323933 - 6323756
Alignment:
| Q |
94 |
acattctttactggtccgcattcttaaagatgaaactacaagaatcaatgctcaaaccatgtcaaggatttctcaagggtacttttggaaaaggtttacc |
193 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||| ||| ||| ||||||| ||||||| ||| || |||||||||| | | ||||| ||| |||| |
|
|
| T |
6323933 |
acattctctactggtccgcgttcttgaagatgggactgttagagacaatgctgaaaccattagaagcatatctcaagggtgttatcggaaatggtgtacc |
6323834 |
T |
|
| Q |
194 |
agtcaaaggatacattgatttggacacaacttttggtaaaggtgagaataccaaaaccatcaaggtcaggtacttcgtc |
272 |
Q |
| |
|
||| |||||||| ||||||||||||||||| || || ||| | | ||| |||||| |||||||| |||||||||||| |
|
|
| T |
6323833 |
agtgaaaggatatattgatttggacacaacattcggaaaatgagggaa-gccaaaatgatcaaggtgaggtacttcgtc |
6323756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University