View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21063_low_16 (Length: 322)
Name: NF21063_low_16
Description: NF21063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21063_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 108 - 303
Target Start/End: Original strand, 31565454 - 31565649
Alignment:
| Q |
108 |
tctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctattcaaggatagacactctttga |
207 |
Q |
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| T |
31565454 |
tctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctattcaaggatagccactctttga |
31565553 |
T |
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| Q |
208 |
ttacagtatacaaatattgtgaaatttactttataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagttgctcggtaacat |
303 |
Q |
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| T |
31565554 |
ttacagtatacaaatattgtgaaatttactctataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagttgctcggtaacat |
31565649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 33414021 - 33413910
Alignment:
| Q |
105 |
aggtctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctattcaaggatagacactctt |
204 |
Q |
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| T |
33414021 |
aggtttgaattgtttgtttcattaattcttgacatttgttacttatcatgtaaatgataataatcattaatcattgatctgtttgaagataggcactctt |
33413922 |
T |
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| Q |
205 |
tgattacagtat |
216 |
Q |
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| T |
33413921 |
tgcttatagtat |
33413910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 31565386 - 31565451
Alignment:
| Q |
1 |
atacaacagagtgagatcaattttgaaaacagaaatcataataaccaaatgttgattagacgccaa |
66 |
Q |
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| T |
31565386 |
atacaacagagtgagatcaattttgaaaacagaaatcataataaccaaatgttgattagacgccaa |
31565451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 33351120 - 33351038
Alignment:
| Q |
105 |
aggtctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctatt |
187 |
Q |
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| T |
33351120 |
aggtttgaattgtttgtttcattaattcttgacatttgttactactattgtaaaggataataatcattaatcattgatctatt |
33351038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 33414169 - 33414090
Alignment:
| Q |
36 |
tcataataaccaaatgttgattagacgccaatacattttactgatatgtatctctatcgaggatagatgaggtctgaatt |
115 |
Q |
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| T |
33414169 |
tcataataaccaaatgttgattaggcgcggacacgttttactgatctgtatctgtattgaggatacatgaggactgaatt |
33414090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 33413867 - 33413817
Alignment:
| Q |
240 |
ataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagt |
290 |
Q |
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| T |
33413867 |
ataagttatgcgtatatctaagaagtggaagcttaaagggagcgataaagt |
33413817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 33351261 - 33351212
Alignment:
| Q |
36 |
tcataataaccaaatgttgattagacgccaatacattttactgatatgta |
85 |
Q |
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| T |
33351261 |
tcataataaccaaatgttgattaggcgcggacacattttactgatctgta |
33351212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 17446159 - 17446233
Alignment:
| Q |
105 |
aggtctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcatt |
179 |
Q |
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| T |
17446159 |
aggtttgaattgtttgtttgattaactcttgatatttgttacttctcatgtaaatgataataatcattaatcatt |
17446233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 17446284 - 17446348
Alignment:
| Q |
227 |
tgaaatttactttataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagtt |
291 |
Q |
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| T |
17446284 |
tgaaatttgctctataagttatgcgtatatctgggaagtggaagcttaaaggaagcaataaagtt |
17446348 |
T |
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