View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21063_low_18 (Length: 294)
Name: NF21063_low_18
Description: NF21063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21063_low_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 22 - 294
Target Start/End: Complemental strand, 40870949 - 40870681
Alignment:
| Q |
22 |
atagtatttagtcaattttcaatattaattcaaaatataaggtaatcctcacatataaatttgtattgactcctgcagtataacctggttgaagcttaac |
121 |
Q |
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| T |
40870949 |
atagtatttagtcaattttcaacattaattcaaaatataaggtaatcctcacatataaatttgtattgactcctgcagtataacctggttgaagcttaac |
40870850 |
T |
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| Q |
122 |
cgcagtaccaaaatatccagatttataagagtgatatgacttgaatccactccctgtgttgcaaagaaatgcttagaagtggtaagaatccatactaaaa |
221 |
Q |
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| T |
40870849 |
cgcagtaccaaaatatccagatttataagagtgatatgacttgaatccactccctgtgttgcaaagaaatgcttagaagtggtaagaatccatactaaaa |
40870750 |
T |
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| Q |
222 |
taataatagattattgcattatatggtatgcatgtactatgtaagtagttgcagagactaatttctcaaatta |
294 |
Q |
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| T |
40870749 |
taataatagatttttgcattatatggt----atgtactatgtaagtagttgcagagactaatttctcaaatta |
40870681 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 21085410 - 21085506
Alignment:
| Q |
90 |
actcctgcagtataacctggttgaagcttaaccgcagtaccaaaatatccagatttataagagtgatatgacttgaatccactccctgtgttgcaaa |
186 |
Q |
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||||| |||||||| || || |||||||||| |||| |||||| ||||| ||||||||||| ||| ||||||||||||||| ||| |||| |||| |
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| T |
21085410 |
actccagcagtatagccaggatgaagcttaattgcagcaccaaagtatccggatttataagaatgaagtgacttgaatccactacctatgtttcaaa |
21085506 |
T |
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