View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21063_low_22 (Length: 275)
Name: NF21063_low_22
Description: NF21063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21063_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 40870462 - 40870703
Alignment:
| Q |
18 |
atacataatcattaactcgaaaaataactcttgaaatttcaagcatttcataatttgtcgcatgtgtacataaattttgttacaatattaatttctttca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870462 |
atacataatcattaactcgaaaaataactcttgaaatttcaagcatttcataatttgtcgcatgtgtacataaattttgttacaatattaatttctttca |
40870561 |
T |
|
| Q |
118 |
tctttgcactatatattactcttctcaattttagatgagccaaatatgattctaaatttgttaattgcgttctaaactctcgatgaagtaccttgtcgca |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40870562 |
tctttgcactatgtattactcttctcaattttagatgagccaaatatgattctaaatttgttaattgcgttctaaactcttgatgaagtaccttgtcgca |
40870661 |
T |
|
| Q |
218 |
cacgtgttcctacttaatataatttgagaaattagtctctgc |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870662 |
cacgtgttcctacttaatataatttgagaaattagtctctgc |
40870703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University