View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21063_low_7 (Length: 497)
Name: NF21063_low_7
Description: NF21063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21063_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 28 - 481
Target Start/End: Original strand, 55382438 - 55382891
Alignment:
| Q |
28 |
gctataaattaacggttaaaacaacagcattcgctcacctgcttgtatccttggccaacaaagcgagcacgcaatgttatgttaggtgaagaagtggttg |
127 |
Q |
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| T |
55382438 |
gctataaattaacggttaaaacaacagcattcattcacctgcttgtatccttggccaacaaagcgagcacgcaatgttatgttaggtgaagaagtggttg |
55382537 |
T |
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| Q |
128 |
cagctttgataatagcagcctcctcgggaagtagctgagaagtatctgtaggaagtgcaggctcagcatttggatttgagtttccaaaaaggggagcccc |
227 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55382538 |
cagctttgataatagcagcctcctcgggaagtagatgagaagtatctgtaggaagtgcaggctcagcatttggatttgagtttccaaaaaggggagcccc |
55382637 |
T |
|
| Q |
228 |
ttgaatataccttcattttgtagtaagaaatgaaatgaataattgattgtatagtaagttatgtttgtgttggcatggtctgcattttataaattgtaga |
327 |
Q |
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| T |
55382638 |
ttgaatataccttcattttgtagtaagaaatgaaatgaataattgattgtatagtaagttatgtttgtgttggcatggtctgcattttataaattgtaga |
55382737 |
T |
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| Q |
328 |
agttgagtatcaaaaaagactacttttgagggatgtatgtttccttgaaagagtgtaggtgttaccttcctgctatgcatacatacttgaggtgaggggt |
427 |
Q |
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| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55382738 |
aattgagtatcaaaaaagactacttttgagggatgtaagtttccttgaaagagtgtgggtgttaccttcctgctatgcatacatacttgaggtgaggggt |
55382837 |
T |
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| Q |
428 |
gtaaacaggtttggagcaatattgttgaacataatcaaggagacccctggtttg |
481 |
Q |
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| T |
55382838 |
gtaaacaggtttggagcaatattgttgaacataatcaaggagacccctggtttg |
55382891 |
T |
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