View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21063_low_8 (Length: 481)
Name: NF21063_low_8
Description: NF21063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21063_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Complemental strand, 3862600 - 3862149
Alignment:
| Q |
18 |
cataatcttcatccctctccagtccaatcaccttagcagctgcaatctctgctacatgtaaatcttcctgagttccacaagcagcaagcaaagacctcca |
117 |
Q |
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| T |
3862600 |
cataatcttcatccctctccagtccaatcaccttagcagctgcaatctctgctacatgtaaatcttcctgagttccacaagcagcaagcaaagacctcca |
3862501 |
T |
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| Q |
118 |
aaccactccacatgactcaaaacctagttcatgtatcatcttttgtgctctcgacaactctcctttttgccccatgagccgtatcattgaacaacaatgc |
217 |
Q |
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| T |
3862500 |
aaccactccacatgactcaaaacctagttcatgtatcatcttttgtgctctcgacaactctcctttttgccccatgagccgtatcattgaacaacaatgc |
3862401 |
T |
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| Q |
218 |
ttaatggacggtgcaatcccatattcattaatcatagcatcaaaatactgaatacccatctcaaatggtatttggctatgtgaacatgctgatataacat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3862400 |
ttaatggacggtgcaatcccatattcattaatcatagcatcaaaatactgaatacccatctcaaatggtatttggctatgtgaacatgctgatataacat |
3862301 |
T |
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| Q |
318 |
taagaaatgtgataccgtcaggttttgtatctctttccattttcagcaactcgaataggctaatagcttgtgcagaatcgctgttgcgagcatacccata |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
3862300 |
taagaaatgtgataccgtcaggttttgtatctctttccattttcagcaactcgaataggctaatagcttgtgcagaatcaccgttgcgagcatacccata |
3862201 |
T |
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| Q |
418 |
tatcattgcattccagcttaccaaattcctattagaaagcacgttgaatatt |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3862200 |
tatcattgcattccagcttaccaaattcctattagaaagcacgttgaatatt |
3862149 |
T |
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