View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21064_high_1 (Length: 591)
Name: NF21064_high_1
Description: NF21064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21064_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 10 - 576
Target Start/End: Complemental strand, 55939627 - 55939048
Alignment:
| Q |
10 |
aagaatataacctaataaacc-ataaaacgagacaccatataatttataattaagtgtaatacaactaaaactggatcaaacaatgctacaggtgaagag |
108 |
Q |
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| T |
55939627 |
aagaaaataacctaataaacccataaaacgagacaccatataatttataattaagtgtaatacaactaaaactggattaaacaatgctacaggtgaagag |
55939528 |
T |
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| Q |
109 |
aagtatcaacaccagagtcatagacattattccatgatgcctgcaggggttttgattgtgagcagaagttcttgaagagtactagggtctcaacagtatc |
208 |
Q |
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| T |
55939527 |
aagtatcaacaccagagtcatagacattattccatgatgcctgcaggggttttgattgtgagcagaagttcttgaagagtactagggtctcaacagtatc |
55939428 |
T |
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| Q |
209 |
actactactcgtgctagtgctagtg---------ttgttatcatcttgcatgccctgtgatgttgttggccatagtgaaagagaaacatgaggtggtgat |
299 |
Q |
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| T |
55939427 |
actactactcgtgctagtgctagtgctagtgttgttgttatcatcttgcatgccttgtgatgttgttggccatagtgaaagagaaacatgaggtggtgat |
55939328 |
T |
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| Q |
300 |
ggtgaccctgatgaattgatgttgatcaattcagggtggaaaaacagccttgtaattggttcgtgactcataccacgactcgaataattcaaatgtttag |
399 |
Q |
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| T |
55939327 |
ggtgaccctgatgaattgatgttgatcaattcagggtggaaaaacagccttgtaattggttcgtgactcataccacgactcgaataattcaaatgtttag |
55939228 |
T |
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| Q |
400 |
tttcatgattgccaagcatttttaatagctctctcttctccctcatttctttcactctttgcaactgtctaaacctctcttgtagcaaaataatggaaga |
499 |
Q |
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| T |
55939227 |
tttcatgattgccaagcatttttaatagctctctcttctccctcatttctttcactctttgcaactgtctaaacctctcttgtagcaaaataatggaaga |
55939128 |
T |
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| Q |
500 |
gttaacaacaacaggatcatggattttcctattcattataaagagtatgtagaat---taatgatctcaactcaaatgtg |
576 |
Q |
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| T |
55939127 |
gttaaccacaacaggatcatggattttcctattcattataaagagtatgtagaattaataatgatctcaactcaaatgtg |
55939048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 425 - 510
Target Start/End: Complemental strand, 9587584 - 9587499
Alignment:
| Q |
425 |
tagctctctcttctccctcatttctttcactctttgcaactgtctaaacctctcttgtagcaaaataatggaagagttaacaacaa |
510 |
Q |
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| T |
9587584 |
tagctctctctcttctctcatttcttttactctttccaattgtctaaacctctcttgtagaagtgcaatggaagagtgaacaacaa |
9587499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 255 - 298
Target Start/End: Complemental strand, 9587745 - 9587702
Alignment:
| Q |
255 |
tgtgatgttgttggccatagtgaaagagaaacatgaggtggtga |
298 |
Q |
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| T |
9587745 |
tgtgatgttgttggccaaagagaaagagaaacatgaggtggtga |
9587702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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