View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21064_high_10 (Length: 228)
Name: NF21064_high_10
Description: NF21064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21064_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 51729132 - 51728942
Alignment:
| Q |
20 |
tataatgccagaaaatttcttctcagaggtggaaaaaggcaaaattctacttaaaaaagcatcaaagtggtggttttgtaatgaaggaatcaaatttgaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51729132 |
tataatgccagaaaatttcttctcagaggtggaaaaaggcaaaattctacttaaaaaagcatcaaagtggtggttttgtaatgaaggaatcgaatttgaa |
51729033 |
T |
|
| Q |
120 |
gataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatggaaagaaaaagatcaaaaccattttaccagagccttttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51729032 |
gataacactgaggtggaagccgatgtagtgatccttgcaactggttttaatggaaagaaaaagatcaaaaccattttaccagagccttttt |
51728942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 19056734 - 19056872
Alignment:
| Q |
72 |
aaaaaagcatcaaagtggtggttttgtaatgaaggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatg |
171 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||| |||||| ||||||| || |||||| | | || || ||||| || | ||||||||||||| ||||| |
|
|
| T |
19056734 |
aaaagagcatcaaagtggtgtttttggaatggaggaattgaatttgatgacaacactaaaattgatgctgatgttgttcttcttgcaactggttatgatg |
19056833 |
T |
|
| Q |
172 |
gaaagaaaaagatcaaaaccattttaccagagccttttt |
210 |
Q |
| |
|
| || || ||| ||||||||||||| ||||||||||||| |
|
|
| T |
19056834 |
ggaaaaagaagctcaaaaccattttgccagagccttttt |
19056872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 19188465 - 19188327
Alignment:
| Q |
72 |
aaaaaagcatcaaagtggtggttttgtaatgaaggaatcaaatttgaagataacactgaggtggaagccgatgtagtgatccttgcaactggttttgatg |
171 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||| |||||| ||||||| || |||||| | | || || ||||| || | ||||||||||||| ||||| |
|
|
| T |
19188465 |
aaaagagcatcaaagtggtgtttttggaatggaggaattgaatttgatgacaacactaaaattgatgctgatgttgttcttcttgcaactggttatgatg |
19188366 |
T |
|
| Q |
172 |
gaaagaaaaagatcaaaaccattttaccagagccttttt |
210 |
Q |
| |
|
| || || ||| ||||||||||||| ||||||||||||| |
|
|
| T |
19188365 |
ggaaaaagaagctcaaaaccattttgccagagccttttt |
19188327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University