View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21064_high_11 (Length: 226)
Name: NF21064_high_11
Description: NF21064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21064_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 49095344 - 49095263
Alignment:
| Q |
135 |
aatgtttataatataattg-ggagtctatcagcaatgcaaatttgttaaaatgattttatttgacagtaaattttattttat |
215 |
Q |
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| T |
49095344 |
aatgtttataatataattgaggagtgtataagcaatgtaaatttgttaaaataattttatttgacagtaaattttattttat |
49095263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 22873576 - 22873450
Alignment:
| Q |
88 |
ccgtgtgttcgcacgggttgcgccgttggcgcannnnnnnnnngccaaatgtttataatataatt-gggagtctatcagcaatgcaaatttgttaaaatg |
186 |
Q |
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| T |
22873576 |
ccgtgagttcgcacgggttgcgccgttggcgca-ttttcttttgcc-aatgtttataatataattggggagtgtataagcaatgcaaatttgttaaaata |
22873479 |
T |
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| Q |
187 |
attttatttgacagtaaattttattttat |
215 |
Q |
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| T |
22873478 |
attttatttggcaggaaattttattttat |
22873450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 11557946 - 11557862
Alignment:
| Q |
135 |
aatgtttataatataattgg-gagtctatcagcaatgcaaatttgttaaaatgatt---ttatttgacagtaaattttattttat |
215 |
Q |
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| T |
11557946 |
aatgtttataatataattggagagtgtataagcaatgcaaatttgttaaaataattttattatttggcagtaaattttattttat |
11557862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 36063625 - 36063684
Alignment:
| Q |
22 |
atgaacaaggtcactttgtaagtaaaaaagatcgaaggatcaatgttaagttccttcatta |
82 |
Q |
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| T |
36063625 |
atgaacaaggtcactttgtaagtaaaaaagatcgaaggatcaat-ttaagttccttcatta |
36063684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 37031961 - 37031900
Alignment:
| Q |
135 |
aatgtttataatataattggg-agtctatcagcaatgcaaatttgttaaaatgattttattt |
195 |
Q |
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||||||||||||||||||||| ||| ||| |||||||||||||||||||||| ||||||||| |
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| T |
37031961 |
aatgtttataatataattggggagtgtataagcaatgcaaatttgttaaaataattttattt |
37031900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 26440824 - 26440903
Alignment:
| Q |
135 |
aatgtttataatataatt-gggagtctatcagcaatgcaaatttgttaaaatgattttatttgacagtaaattttatttt |
213 |
Q |
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|||||||||||||||||| |||||| ||| |||||||||||||||||||||| | |||||||| || ||||||||||||| |
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| T |
26440824 |
aatgtttataatataatttgggagtgtataagcaatgcaaatttgttaaaataactttatttggcattaaattttatttt |
26440903 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 41086234 - 41086295
Alignment:
| Q |
135 |
aatgtttataatataattggg-agtctatcagcaatgcaaatttgttaaaatgattttattt |
195 |
Q |
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||||||||||||||||||||| ||| || |||||||||||||||||||||| ||||||||| |
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|
| T |
41086234 |
aatgtttataatataattggggagtgtacaagcaatgcaaatttgttaaaataattttattt |
41086295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 22034268 - 22034300
Alignment:
| Q |
85 |
tatccgtgtgttcgcacgggttgcgccgttggc |
117 |
Q |
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| T |
22034268 |
tatccgtgcgttcgcacgggttgcgccgttggc |
22034300 |
T |
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