View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21064_high_13 (Length: 205)

Name: NF21064_high_13
Description: NF21064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21064_high_13
NF21064_high_13
[»] chr2 (2 HSPs)
chr2 (22-82)||(36063625-36063684)
chr2 (135-185)||(37031910-37031961)
[»] chr7 (3 HSPs)
chr7 (135-185)||(11557895-11557946)
chr7 (88-185)||(22873480-22873576)
chr7 (135-185)||(49095293-49095344)
[»] chr6 (1 HSPs)
chr6 (135-185)||(26440824-26440875)
[»] chr8 (1 HSPs)
chr8 (135-185)||(41086234-41086285)
[»] chr5 (1 HSPs)
chr5 (85-117)||(22034268-22034300)


Alignment Details
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 36063625 - 36063684
Alignment:
Q  22 atgaacaaggtcactttgtaagtaaaaaagatcgaaggatcaatgttaagttccttcatta 82  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36063625 atgaacaaggtcactttgtaagtaaaaaagatcgaaggatcaat-ttaagttccttcatta 36063684  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 37031961 - 37031910
Alignment:
Q  135 aatgtttataatataattggg-agtctatcagcaatgcaaatttgttaaaat 185  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||||||||||    
T  37031961 aatgtttataatataattggggagtgtataagcaatgcaaatttgttaaaat 37031910  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 11557946 - 11557895
Alignment:
Q  135 aatgtttataatataattgg-gagtctatcagcaatgcaaatttgttaaaat 185  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||||||||||    
T  11557946 aatgtttataatataattggagagtgtataagcaatgcaaatttgttaaaat 11557895  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 22873576 - 22873480
Alignment:
Q  88 ccgtgtgttcgcacgggttgcgccgttggcgcannnnnnnnnngccaaatgtttataatataatt-gggagtctatcagcaatgcaaatttgttaaaat 185  Q
    ||||| |||||||||||||||||||||||||||          ||| |||||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  22873576 ccgtgagttcgcacgggttgcgccgttggcgca-ttttcttttgcc-aatgtttataatataattggggagtgtataagcaatgcaaatttgttaaaat 22873480  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 49095344 - 49095293
Alignment:
Q  135 aatgtttataatataattg-ggagtctatcagcaatgcaaatttgttaaaat 185  Q
    ||||||||||||||||||| ||||| ||| ||||||| ||||||||||||||    
T  49095344 aatgtttataatataattgaggagtgtataagcaatgtaaatttgttaaaat 49095293  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 26440824 - 26440875
Alignment:
Q  135 aatgtttataatataatt-gggagtctatcagcaatgcaaatttgttaaaat 185  Q
    |||||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  26440824 aatgtttataatataatttgggagtgtataagcaatgcaaatttgttaaaat 26440875  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 41086234 - 41086285
Alignment:
Q  135 aatgtttataatataattggg-agtctatcagcaatgcaaatttgttaaaat 185  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||||||||||||    
T  41086234 aatgtttataatataattggggagtgtacaagcaatgcaaatttgttaaaat 41086285  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 22034268 - 22034300
Alignment:
Q  85 tatccgtgtgttcgcacgggttgcgccgttggc 117  Q
    |||||||| ||||||||||||||||||||||||    
T  22034268 tatccgtgcgttcgcacgggttgcgccgttggc 22034300  T

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