View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21064_high_3 (Length: 464)
Name: NF21064_high_3
Description: NF21064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21064_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Original strand, 44154001 - 44154421
Alignment:
| Q |
16 |
atcagaaagaacactgatacctttgattttccagtttgaaatgtcgtagtcgtcaaaatcttcttcattaactgtaaatgcatccatcaataacaattac |
115 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
44154001 |
atcagaaagaacaataatacctttgattttccagtttgaaatgtcgtagtcgtcaaaatcttcttcattttctgtaaatgcatcaatcaataacaattac |
44154100 |
T |
|
| Q |
116 |
cagacacattctaaacacatgaagaaacatccttaaatcagaaaaaacaataataccaaattcttcatcccgctcatcatagttgtcctcaaattgttct |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44154101 |
cagacacattctaaacacatgaagaaacatccttaaatcagaaaaaacagtaataccaaattcttcatcccgctcatcatagttgtcctcaaattgttct |
44154200 |
T |
|
| Q |
216 |
tcttttgttttttctgcatcgatcaataataataatattaattacccaaaacattataaacattaacaaatgaaataagtaagaaagaagagtagtaata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44154201 |
tcttttgttttttctgcatcgatcaataataataatattaattacccaaaacattataaacattaacaaatgaaataagtcagaaagaagagtagtaata |
44154300 |
T |
|
| Q |
316 |
cttccgtagaaatagtggaaatcatcaggggtcatgtatttgatggagtttgacttgtctttgaacacataatattctccttctactgttactgcatcat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44154301 |
cttccgtagaaatagtggaaatcatcaggggtcatgtatttgatggagtttgacttgtctttgaacacataatattctccttctactgttactgcatcat |
44154400 |
T |
|
| Q |
416 |
tagcatccatcaatcaatcaa |
436 |
Q |
| |
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| T |
44154401 |
tagcatccatcaatcaatcaa |
44154421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 447
Target Start/End: Original strand, 40898726 - 40899157
Alignment:
| Q |
16 |
atcagaaagaacactgatacctttgattttccagtttgaaatgtcgtagtcgtcaaaatcttcttcattaactgtaaatgcatccatcaataacaattac |
115 |
Q |
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||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||| |||||| |
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| T |
40898726 |
atcagaaagaacaataatacctttgattttccagtatgaaatgtcgtagtcgtcaaaatcttcttcattttctgtaaatgtatcaatcaataataattac |
40898825 |
T |
|
| Q |
116 |
cagacacattctaaacacatgaagaaacatccttaaatcagaaaaaacaataataccaaattcttcatcccgctcatcatagttgtcctcaaattgttct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40898826 |
cagacacattctaaacacatgaagaaacatccttaaatcagaaaaaacaataataccaaattcttcatcccgctcatcatagctgtcctcaaattgttct |
40898925 |
T |
|
| Q |
216 |
tcttttgttttttctgcatcgatcaataataataatattaattacccaaaacattataaacattaacaaatgaaataagtaagaaagaagagtagtaata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
40898926 |
tcttttgttttttctgcatcgatcaataataataataataattacccaaaacattataaacattaacaactgaaataagtcagaaagaagagtagtaata |
40899025 |
T |
|
| Q |
316 |
cttccgtagaaatagtggaaatcatcaggggtcatgtatttgatggagtttgacttgtctttgaacacataatattctccttctactgttactgcatcat |
415 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||| | |
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| T |
40899026 |
cttcggtagaaatagtggaaatcatcaggggtcatgcatttgatggagtttgatttgtctttgaacacataatattctccttttactgttacagcatcgt |
40899125 |
T |
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| Q |
416 |
tagcatccatcaatcaatcaaacattaattac |
447 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |
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|
| T |
40899126 |
tagcatccatcaatcaatcaaaaattaattac |
40899157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 40894013 - 40893952
Alignment:
| Q |
296 |
aagaaagaagagtagtaatacttccgtagaaatagtggaaatcatcaggggtcatgtatttg |
357 |
Q |
| |
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|||| |||||||||||||||||| ||| || ||||| ||||||| ||| ||||| ||||||| |
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| T |
40894013 |
aagatagaagagtagtaatactttcgtggacatagttgaaatcagcagaggtcaggtatttg |
40893952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 40899273 - 40899318
Alignment:
| Q |
273 |
aaacattaacaaatgaaataagtaagaaagaagagtagtaatactt |
318 |
Q |
| |
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|||||||||||||||||||| | || ||||||||||||||||||| |
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| T |
40899273 |
aaacattaacaaatgaaatatgccagcaagaagagtagtaatactt |
40899318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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