View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21064_low_1 (Length: 718)
Name: NF21064_low_1
Description: NF21064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21064_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 375 - 687
Target Start/End: Complemental strand, 14014624 - 14014311
Alignment:
| Q |
375 |
tgtgctagatttacttatatttgaaatctgtgtgttgctgtaatttggtttcatgtaggaaattgatcgagcattatgcatctctgtttgaaatctagga |
474 |
Q |
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| T |
14014624 |
tgtgctagatttacttatatttgaaatctgtgtgttgctgtaatttggtttcatgtaggaaattgatcgagcattatgcatctctggttgaaatctagga |
14014525 |
T |
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| Q |
475 |
attagggttagtgttataagtttatacctctctatcattatagaagacttgtatatgattgtggtcagtattcggtaaaatcagtttttagagtctgagt |
574 |
Q |
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| T |
14014524 |
attagggttagtgttataagtttatacctccctatcattatagaagacttgtatatgattgtggtcattattcggtaaaatcagtttttagagtctgagt |
14014425 |
T |
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| Q |
575 |
tccgcaaaaaatgataaaaatcgtctatctcgattcatgtgcgccttttgttttgattg-aagggaatgtgttatttggtttcttattgctaggaattct |
673 |
Q |
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| T |
14014424 |
tccgcaaaaaatgataaaaatcgtctatctcgattcatgtgcgccttttgttttgattgaaagggaatgtgttatttggtttcttattgctagaaattct |
14014325 |
T |
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| Q |
674 |
tatacacgtttgga |
687 |
Q |
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| T |
14014324 |
tatacatgtttgga |
14014311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 14015010 - 14014895
Alignment:
| Q |
1 |
tcgcaaactcaaacaaacgcctttctctcacctcctccaatggccgaccagctcactgatgatcagatcgccgagttcaaggaggccttcagcctattcg |
100 |
Q |
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| T |
14015010 |
tcgcaaactcaaacaaacgcctttctctcacctcctccaatggccgaccagctcactgatgatcagatcgccgagttcaaggaggccttcagcctcttcg |
14014911 |
T |
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| Q |
101 |
ataaggatggcgatgg |
116 |
Q |
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| T |
14014910 |
ataaggatggcgatgg |
14014895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 38319710 - 38319627
Alignment:
| Q |
33 |
tcctccaatggccgaccagctcactgatgatcagatcgccgagttcaaggaggccttcagcctattcgataaggatggcgatgg |
116 |
Q |
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| T |
38319710 |
tcctccaatggccgatcaactcaccgacgagcagatctctgagttcaaggaagctttcagcctattcgataaggatggcgatgg |
38319627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 8928138 - 8928074
Alignment:
| Q |
52 |
ctcactgatgatcagatcgccgagttcaaggaggccttcagcctattcgataaggatggcgatgg |
116 |
Q |
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| T |
8928138 |
ctcacagacgatcagatctctgagttcaaggaagctttcagcttattcgacaaggatggcgatgg |
8928074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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