View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21064_low_10 (Length: 375)

Name: NF21064_low_10
Description: NF21064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21064_low_10
NF21064_low_10
[»] chr3 (42 HSPs)
chr3 (18-365)||(7586025-7586372)
chr3 (27-364)||(6945423-6945760)
chr3 (18-365)||(6523014-6523361)
chr3 (18-365)||(6528545-6528892)
chr3 (18-365)||(6841105-6841446)
chr3 (27-364)||(6942091-6942428)
chr3 (18-365)||(6733828-6734175)
chr3 (18-365)||(6781488-6781835)
chr3 (18-365)||(6556246-6556593)
chr3 (27-364)||(8452790-8453127)
chr3 (28-365)||(8469714-8470051)
chr3 (18-161)||(8570483-8570626)
chr3 (18-359)||(6481514-6481855)
chr3 (18-190)||(6730254-6730426)
chr3 (18-193)||(6450326-6450501)
chr3 (30-203)||(6796293-6796466)
chr3 (18-112)||(6592878-6592972)
chr3 (27-112)||(7748412-7748497)
chr3 (18-74)||(6850803-6850859)
chr3 (30-74)||(6880964-6881008)
chr3 (27-74)||(6915549-6915596)
chr3 (27-112)||(6723613-6723698)
chr3 (18-120)||(6931994-6932096)
chr3 (243-365)||(8588077-8588199)
chr3 (30-74)||(5266527-5266571)
chr3 (27-161)||(5297106-5297240)
chr3 (27-101)||(6236146-6236220)
chr3 (27-74)||(6264130-6264177)
chr3 (18-65)||(6521799-6521846)
chr3 (18-61)||(6521934-6521977)
chr3 (18-65)||(6522069-6522116)
chr3 (18-61)||(6522339-6522382)
chr3 (18-65)||(6522474-6522521)
chr3 (18-61)||(6522609-6522652)
chr3 (18-65)||(6522744-6522791)
chr3 (18-61)||(6522879-6522922)
chr3 (27-161)||(6898449-6898583)
chr3 (18-55)||(6840835-6840872)
chr3 (18-55)||(6840970-6841007)
chr3 (18-101)||(6140707-6140790)
chr3 (18-101)||(6167318-6167401)
chr3 (18-58)||(8588273-8588313)
[»] scaffold1643 (1 HSPs)
scaffold1643 (25-365)||(324-664)
[»] scaffold0425 (1 HSPs)
scaffold0425 (18-365)||(9294-9641)
[»] scaffold2053 (1 HSPs)
scaffold2053 (244-364)||(13-133)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 7586372 - 7586025
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatag 117  Q
    ||||||||||||||||||||||| |||||||| || ||| |||||||||| |||||||||| ||||||||||| |||||| |||||||||||||||||||    
T  7586372 aaaagggctctgcctcaacaccttccttctttacagaaactggagattaaagattgcaagaagttggaagcattaattccgaagtgtgataatatgatag 7586273  T
Q  118 agttagatatacaggaatgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttgtgataatcagtacaccgagttctccgt 217  Q
    ||||||||||| ||  |||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7586272 agttagatataaagagatgtgatagaattttggtaaatgaattgccgacaaatttgaaaagtttattcctttgtgataatcagtacaccgagttctccgt 7586173  T
Q  218 ggaccaaaatctaatcaatattctctttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatctacgttgctatagttct 317  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  7586172 ggaccaaaatctaatcaatattctctttcttgaagtgttgaagtttgatttcagaggctgtgtaaactgtccctctttggatttacgttgctataattct 7586073  T
Q  318 cttgaaacactttcaataataggatggcgcttctcctccttgcctttg 365  Q
    |||      |||||||||| |||||||| || ||||||||||||||||    
T  7586072 cttcgtgatctttcaataaaaggatggcactcctcctccttgcctttg 7586025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 27 - 364
Target Start/End: Complemental strand, 6945760 - 6945423
Alignment:
Q  27 ctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatagagttagata 126  Q
    |||||||||||||| |||||||| ||||||||| |  ||  || ||| ||   |||||| | |||| |||||||| ||||||||||||||||||||||||    
T  6945760 ctgcctcaacaccttccttctttacaaaaattgcaactttgtgtttgtaaacagttggaggtatcagttcccaagagtgataatatgatagagttagata 6945661  T
Q  127 tacaggaatgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttgtgataatcagtacaccgagttctccgtggaccaaaa 226  Q
    |||||  |||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6945660 tacagagatgtgatagaattttggtaaatgaattgccgacaaatttgaaaaggttattactttgtgataatcagtacaccgagttctccgtggaccaaaa 6945561  T
Q  227 tctaatcaatattctctttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatctacgttgctatagttctcttgaaaca 326  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||| |    
T  6945560 tctaatcaatattctctttcttgaaaagttgaggttggatttcagaggctgtgtaaactgtccctctttggatttacgttgctataattatcttgaaaga 6945461  T
Q  327 ctttcaataataggatggcgcttctcctccttgccttt 364  Q
    |||||||||| ||||||||  | |||||||||||||||    
T  6945460 ctttcaataaaaggatggcattcctcctccttgccttt 6945423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 6523014 - 6523361
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatag 117  Q
    ||||||||||||||||||||||| |||||||| |||||| || |||||| | ||||||| | | |||| |||||||||||||||||||||||||||||||    
T  6523014 aaaagggctctgcctcaacaccttccttctttacaaaaactgaagattagtaattgcaacaagatggaggcatcaattcccaagtgtgataatatgatag 6523113  T
Q  118 agttagatatacaggaatgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttgtgataatcagtacaccgagttctccgt 217  Q
    ||||||||||||||   ||||||||||||||||||||||||||| |||| ||  |||||| |||| |||||||  | |||| | |||| |||||||||||    
T  6523114 agttagatatacagagttgtgatagaattttggtaaatgaattgccgactagcctgaaaaagttactcctttggcaaaatcggaacacggagttctccgt 6523213  T
Q  218 ggaccaaaatctaatcaatattctctttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatctacgttgctatagttct 317  Q
    |||||||||| |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |    
T  6523214 ggaccaaaatttaatcaattttccctttcttgaagacttgaagttggatttcagaggctgtgtaaactgtccctctttggatttacgttgctataatttt 6523313  T
Q  318 cttgaaacactttcaataataggatggcgcttctcctccttgcctttg 365  Q
    |||      |||||||||| ||| ||| ||| ||||||||||||||||    
T  6523314 cttcgtgatctttcaataaaaggctggtgctcctcctccttgcctttg 6523361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 6528545 - 6528892
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatag 117  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||||||| ||||||||  | | |||| ||| |||||||||||||||||||||||||||    
T  6528545 aaaagggctctgcctcaacaccttccttctttacaaaaactggagattattgattgcagcaagatggaggcaacaattcccaagtgtgataatatgatag 6528644  T
Q  118 agttagatatacaggaatgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttgtgataatcagtacaccgagttctccgt 217  Q
    ||||||||||||||  |||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  6528645 agttagatatacagacatgtgatagaattttggtaaatgaatttccgacgagtttgaaaaggttattcctttgtgataatcagtacaccgagttatccat 6528744  T
Q  218 ggaccaaaatctaatcaatattctctttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatctacgttgctatagttct 317  Q
    | | |||||| |||| ||| ||| ||||||||||||||||  ||||||||  || |||| ||| || ||||| ||||||||| |||||||||||| ||||    
T  6528745 gcagcaaaatgtaataaattttccctttcttgaagagttggggttggattggagtggctctgtgaaatgtccttctttggatttacgttgctataattct 6528844  T
Q  318 cttgaaacactttcaataataggatggcgcttctcctccttgcctttg 365  Q
    |||   | ||| ||||||| |||||||| || ||||||||||||||||    
T  6528845 ctttggagactatcaataaaaggatggcactcctcctccttgcctttg 6528892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 6841105 - 6841446
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatag 117  Q
    ||||||||||||||||||||||| |||||||| |||||| || |||||   |||||||| | | |||| ||||||||||||||| |||||||||||||||    
T  6841105 aaaagggctctgcctcaacaccttccttctttacaaaaactgcagatttgggattgcaacaagatggaggcatcaattcccaagagtgataatatgatag 6841204  T
Q  118 agttagatatacaggaatgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttgtgataatcagtacaccgagttctccgt 217  Q
    ||||||||||||||  |||||||||||||||||||||||||||| |||| || |||||||||||| |||||||||||||||| ||||| |||||||||||    
T  6841205 agttagatatacagagatgtgatagaattttggtaaatgaattgccgaccagcttgaaaaggttactcctttgtgataatcaatacacggagttctccgt 6841304  T
Q  218 ggaccaaaatctaatcaatattctctttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatctacgttgctatagttct 317  Q
    |||||||||| |||||||| ||| |||||||||||||||| | |||| |      |||| ||| || ||||| ||||||||| || ||||||||| ||||    
T  6841305 ggaccaaaatttaatcaattttccctttcttgaagagttggaattggct------ggctctgtgaaatgtccttctttggatttaagttgctataattct 6841398  T
Q  318 cttgaaacactttcaataataggatggcgcttctcctccttgcctttg 365  Q
    ||| ||| ||||||||||  ||||||| ||| ||||||||||||||||    
T  6841399 cttcaaagactttcaatagaaggatggggctcctcctccttgcctttg 6841446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 27 - 364
Target Start/End: Complemental strand, 6942428 - 6942091
Alignment:
Q  27 ctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatagagttagata 126  Q
    |||||||||||||| |||||||| |||||| || |||||  | ||||||| | | |||| ||||||||||||||||||||||||||||||||||||||||    
T  6942428 ctgcctcaacaccttccttctttacaaaaactgaagattggttattgcaacaagatggaggcatcaattcccaagtgtgataatatgatagagttagata 6942329  T
Q  127 tacaggaatgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttgtgataatcagtacaccgagttctccgtggaccaaaa 226  Q
    |||||  |||||||||||||||||||||||||||| |||| || |||||||| |||||||||||| ||||||||||||||||||||||| || |||||||    
T  6942328 tacagagatgtgatagaattttggtaaatgaattgccgaccagcttgaaaagtttattcctttgttataatcagtacaccgagttctccttgcaccaaaa 6942229  T
Q  227 tctaatcaatattctctttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatctacgttgctatagttctcttgaaaca 326  Q
    | |||||||| ||| |||||| |||||||||  ||||||||| |  |||| |||  | ||||| ||||||||| |||||||||||| ||| |||   |||    
T  6942228 tgtaatcaattttccctttctcgaagagttggtgttggattttactggctttgtggaatgtccttctttggatttacgttgctataattccctttctaca 6942129  T
Q  327 ctttcaataataggatggcgcttctcctccttgccttt 364  Q
    |||||||||| |||||||| || |||||||||||||||    
T  6942128 ctttcaataaaaggatggcactcctcctccttgccttt 6942091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 6734175 - 6733828
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatag 117  Q
    |||||||||||||| |||||||| |||||||| || ||| |||||||||  |||||||| | |||||||||||||||||| |||||||||||||||||||    
T  6734175 aaaagggctctgccacaacaccttccttctttacagaaactggagattagagattgcaacaagttggaagcatcaattcctaagtgtgataatatgatag 6734076  T
Q  118 agttagatatacaggaatgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttgtgataatcagtacaccgagttctccgt 217  Q
    |||||||||||| |  |||||||||||||||||||||||||||| | || |||||||||| |||| |||||| ||| |||||||||||||||||||| ||    
T  6734075 agttagatatacggagatgtgatagaattttggtaaatgaattgcctaccagtttgaaaaagttagtcctttctgaaaatcagtacaccgagttctctgt 6733976  T
Q  218 ggaccaaaatctaatcaa-tattctctttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatctacgttgctatagttc 316  Q
    ||| | |||  || |||| ||| | | ||||||| |||||||| |||||||  || || | |||||| ||||| ||||||||| |  |||| |||| |||    
T  6733975 ggagccaaacttagtcaactatac-cattcttgacgagttgaatttggattggagtggttttgtaaagtgtccttctttggatttgtgttgttataattc 6733877  T
Q  317 tcttgaaacactttcaataataggatggcgcttctcctccttgcctttg 365  Q
    |||||     |||||||||| |||||||| || ||||||||||||||||    
T  6733876 tcttggtgatctttcaataaaaggatggcactcctcctccttgcctttg 6733828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 6781488 - 6781835
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatag 117  Q
    |||||||||||||| |||||||| |||||||| || ||| |||||||||  |||||||| | |||||||||||||||||| |||||||||||||||||||    
T  6781488 aaaagggctctgccacaacaccttccttctttacagaaactggagattagagattgcaacaagttggaagcatcaattcctaagtgtgataatatgatag 6781587  T
Q  118 agttagatatacaggaatgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttgtgataatcagtacaccgagttctccgt 217  Q
    |||||||||||| |  |||||||||||||||||||||||||||| | || |||||||||| |||| |||||| ||| |||||||||||||||||||| ||    
T  6781588 agttagatatacggagatgtgatagaattttggtaaatgaattgcctaccagtttgaaaaagttagtcctttctgaaaatcagtacaccgagttctctgt 6781687  T
Q  218 ggaccaaaatctaatcaa-tattctctttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatctacgttgctatagttc 316  Q
    ||| | |||  || |||| ||| | | ||||||| |||||||| |||||||  || || | |||||| ||||| ||||||||| |  |||| |||| |||    
T  6781688 ggagccaaacttagtcaactatac-cattcttgacgagttgaatttggattggagtggttttgtaaagtgtccttctttggatttgtgttgttataattc 6781786  T
Q  317 tcttgaaacactttcaataataggatggcgcttctcctccttgcctttg 365  Q
    |||||     |||||||||| |||||||| || ||||||||||||||||    
T  6781787 tcttggtgatctttcaataaaaggatggcactcctcctccttgcctttg 6781835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 6556246 - 6556593
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatag 117  Q
    ||||||||||||||||||||||| |||||||| |||||| |||   |   |||||||||   |||||| ||||||||||||||| |||||||||||||||    
T  6556246 aaaagggctctgcctcaacaccttccttctttacaaaaactgggtgtatttgattgcaacgagttggaggcatcaattcccaagagtgataatatgatag 6556345  T
Q  118 agttagatatacaggaatgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttgtgataatcagtacaccgagttctccgt 217  Q
    |||||||||||||| | ||||||||||||||||||||||||||| |||| ||  |||||| |||| ||||| |    |||| |||||| |||||||||||    
T  6556346 agttagatatacagaattgtgatagaattttggtaaatgaattgccgactagcctgaaaaagttactccttcggcgaaatcggtacacggagttctccgt 6556445  T
Q  218 ggaccaaaatctaatcaatattctctttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatctacgttgctatagttct 317  Q
    | |||||||| |||||||| ||| ||||||||||| |||| ||||| |||  || |||| ||| || ||||| ||||||||| |||||||||||| || |    
T  6556446 gcaccaaaatttaatcaattttccctttcttgaagcgttggagttgaattggagtggctctgtgaaatgtccttctttggatttacgttgctataatttt 6556545  T
Q  318 cttgaaacactttcaataataggatggcgcttctcctccttgcctttg 365  Q
    |||      |||||||||| ||| ||| ||| ||||||||||||||||    
T  6556546 cttcgtgatctttcaataaaaggctggtgctcctcctccttgcctttg 6556593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 27 - 364
Target Start/End: Complemental strand, 8453127 - 8452790
Alignment:
Q  27 ctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatagagttagata 126  Q
    |||||||||||||| |||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||  |||||||||| ||||| |||||||    
T  8453127 ctgcctcaacaccttccttctttacaaaaattgttcattaatgattgcaagatgttggaagcatcaattcccaacggtgataatatcatagatttagata 8453028  T
Q  127 tacaggaatgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttgtgataatcagtacaccgagttctccgtggaccaaaa 226  Q
    || ||  |||||||||||||||||||||||||||| |||| || ||||||| ||||||| ||  ||| || | |||||| ||||||||||| || || |     
T  8453027 taaagagatgtgatagaattttggtaaatgaattgccgaccagcttgaaaaagttattcattcttgaaaaccggtacacggagttctccgtagagcagat 8452928  T
Q  227 tctaatcaatattctctttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatctacgttgctatagttctcttgaaaca 326  Q
    | |  |||| | |  | ||||||||| |||| |||||||||| |  |||| | |||| |||||| |||||||| |  ||||||||| ||||||||    |    
T  8452927 tttcgtcaacagtaccattcttgaagtgttggagttggatttgaatggctctttaaaatgtcccactttggatttgtgttgctataattctcttggtgaa 8452828  T
Q  327 ctttcaataataggatggcgcttctcctccttgccttt 364  Q
    |||||||||| | ||||| ||| |||||||||| ||||    
T  8452827 ctttcaataacaagatggtgctcctcctccttgtcttt 8452790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 28 - 365
Target Start/End: Complemental strand, 8470051 - 8469714
Alignment:
Q  28 tgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatagagttagatat 127  Q
    ||||||||||||| |||||||| |||||||| ||||||| ||| ||  |  |||| || ||||| ||||||||| |||||||||| |||||||||||| |    
T  8470051 tgcctcaacaccttccttctttacaaaaattagagattattgactgtgaactgttagaggcatcgattcccaagggtgataatatcatagagttagatct 8469952  T
Q  128 acaggaatgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttgtgataatcagtacaccgagttctccgtggaccaaaat 227  Q
    ||||  |||||||   |||||  ||||||||||| | || || |||||||||||  || || |||| |||  || | || ||||||||||||| |||| |    
T  8469951 acagagatgtgatcacattttaataaatgaattgccaaccagcttgaaaaggttcgtctttcgtgaaaattggttcgccaagttctccgtggagcaaatt 8469852  T
Q  228 ctaatcaatattctctttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatctacgttgctatagttctcttgaaacac 327  Q
     ||||||| | |    ||||||||||||||||||| ||||| | ||||| |||||| |||| |||||||||| | || |||||||||||||||      |    
T  8469851 ttaatcaacaatactattcttgaagagttgaagtttgattttataggctctgtaaaatgtctctctttggatttgcgatgctatagttctcttcgtgatc 8469752  T
Q  328 tttcaataataggatggcgcttctcctccttgcctttg 365  Q
    ||||||||| |||||||| || ||||||||||||||||    
T  8469751 tttcaataacaggatggcactcctcctccttgcctttg 8469714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 8570483 - 8570626
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatag 117  Q
    |||||||| ||||||| |||||| |||||||| |||||| ||||||| | ||||||||||| |||||| || ||||||||||||  |||||||||   ||    
T  8570483 aaaagggccctgcctcgacaccttccttctttacaaaaactggagatcagtgattgcaagaagttggaggcttcaattcccaaggctgataatatcgaag 8570582  T
Q  118 agttagatatacaggaatgtgatagaattttggtaaatgaattg 161  Q
    ||||| || || | ||||||||||| ||||||||||||||||||    
T  8570583 agttatatctagatgaatgtgatagcattttggtaaatgaattg 8570626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 6481514 - 6481855
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatag 117  Q
    |||||||| || ||||||||||| |||||||| || ||||||  ||||| | ||||||| | |||||| || ||||| ||  || ||||||||||  |||    
T  6481514 aaaagggcccttcctcaacaccttccttctttacagaaattgtcgattattaattgcaacaagttggaggcttcaatgcctgagggtgataatatcttag 6481613  T
Q  118 agttagatatacaggaatgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttgtgataatcagtacaccgagttctccgt 217  Q
    |||||  | |  ||| |||||| || |||||| |||| |||||| |||| || ||||||| |||| |||||||||| |||| | |||||||||||| |||    
T  6481614 agttatgtctgaagggatgtgacagcattttgataaaggaattgccgaccagcttgaaaaagttagtcctttgtgaaaatcggcacaccgagttcttcgt 6481713  T
Q  218 ggaccaaaatctaatcaatattctctttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatctacgttgctatagttct 317  Q
    ||| || | | ||  ||| | |  || ||||| |||| ||   |||||||| || |||| |||  | ||||||||||||||| | ||||| |||| ||||    
T  6481714 ggagcatattttaggcaacaatgcctatcttgcagagctgtgcttggatttgagtggctttgttgagtgtccctctttggatttgcgttgttataattct 6481813  T
Q  318 cttgaaacactttcaataataggatggcgcttctcctccttg 359  Q
    |||   || |||||||||||||| ||||||| ||||||||||    
T  6481814 cttcgtacgctttcaataatagggtggcgctcctcctccttg 6481855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 6730254 - 6730426
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatag 117  Q
    |||||||| |||||||||||||| ||||||||  |||||||| |||||  |  ||||||   |||||| ||||||||||||||| |||||||||| ||||    
T  6730254 aaaagggccctgcctcaacaccttccttctttagaaaaattgaagattgtttgttgcaaagagttggaggcatcaattcccaagggtgataatatcatag 6730353  T
Q  118 agttagatatacaggaatgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttg 190  Q
    | ||| || ||  || |||||| || |||||||||||||||||| |||| || ||||||| |||| |||||||    
T  6730354 atttacatctagtgggatgtgaaagcattttggtaaatgaattgccgactagcttgaaaaagttagtcctttg 6730426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 6450326 - 6450501
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatag 117  Q
    |||||||| |||||||||||||| ||||||||  |||||||| |||||  |  ||||||   |||||| ||||||||||||||| |||||||||| ||||    
T  6450326 aaaagggccctgcctcaacaccttccttctttagaaaaattgaagattgtttgttgcaatgagttggaggcatcaattcccaagggtgataatatcatag 6450425  T
Q  118 agttagatatacaggaatgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttgtga 193  Q
    | ||| || ||  || || ||| || |||||||||||||||||| |||| || ||||||| |||| ||||||||||    
T  6450426 atttacatctagtgggatatgaaagcattttggtaaatgaattgccgactagcttgaaaaagttagtcctttgtga 6450501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 6796293 - 6796466
Alignment:
Q  30 cctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatagagttagatatac 129  Q
    ||||||||||| |||||||| || ||| || |||||  ||||||| |   |||||||||||||||||| ||| |||||| |||  || ||||| ||||||    
T  6796293 cctcaacaccttccttctttacagaaaatgaagattggtgattgctacgagttggaagcatcaattccaaagggtgatagtatcgtacagttatatatac 6796392  T
Q  130 aggaatgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttgtgataatcagtac 203  Q
    ||   |||| || ||||||||||||||||||| | ||||| ||||||| |||  |||||||| | |||||||||    
T  6796393 agagttgtggtaaaattttggtaaatgaattgccaacaagcttgaaaaagtttgtcctttgtaaaaatcagtac 6796466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 6592878 - 6592972
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattg-caagatgttggaagcatcaattcccaagtgtgataatat 112  Q
    ||||| || |||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||||| || ||||||||||||  |||||||||    
T  6592878 aaaagagccctgcctcaacaccttccttctttgcaaaaattggagattactgattgccaaga-gttggaggcttcaattcccaaggctgataatat 6592972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 7748497 - 7748412
Alignment:
Q  27 ctgcctcaacacctcccttctttgcaaaaattggagattaatgattg-caagatgttggaagcatcaattcccaagtgtgataatat 112  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||| | || ||||||||||||  |||||||||    
T  7748497 ctgcctcaacaccttccttctttgcaaaaattggagattattgattgccaaga-gttgcaggcttcaattcccaaggctgataatat 7748412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 6850803 - 6850859
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgc 74  Q
    ||||| || |||||||||||||||||||||| ||||||||||||||||| |||||||    
T  6850803 aaaagtgccctgcctcaacacctcccttcttagcaaaaattggagattattgattgc 6850859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 6881008 - 6880964
Alignment:
Q  30 cctcaacacctcccttctttgcaaaaattggagattaatgattgc 74  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  6881008 cctcaacacctcccttctttgcaaaaattggagattattgattgc 6880964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 6915596 - 6915549
Alignment:
Q  27 ctgcctcaacacctcccttctttgcaaaaattggagattaatgattgc 74  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||    
T  6915596 ctgcctcaacaccttccttctttgcaaaaattggagattattgattgc 6915549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 6723613 - 6723698
Alignment:
Q  27 ctgcctcaacacctcccttctttgcaaaaattggagattaatgattg-caagatgttggaagcatcaattcccaagtgtgataatat 112  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||| ||||| | |||| || ||||||||||||  |||||||||    
T  6723613 ctgcctcaacaccttccttcattgcaaaaattggagattattgattgccaaga-gctggaggcttcaattcccaaggctgataatat 6723698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 6932096 - 6931994
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatag 117  Q
    ||||||||||| ||||||||||| |||||||| |||||| ||||||||| ||||||| | | ||| || || |||||||| |||| | ||||||  ||||    
T  6932096 aaaagggctcttcctcaacaccttccttctttacaaaaactggagattagtgattgccacaagtttgaggcttcaattcctaagtttcataataccatag 6931997  T
Q  118 agt 120  Q
    |||    
T  6931996 agt 6931994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 365
Target Start/End: Complemental strand, 8588199 - 8588077
Alignment:
Q  243 tttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatctacgttgctatagttctcttgaaacactttcaataataggat 342  Q
    ||||||||||||||| | |||||||| |  ||||  ||  | ||||||||||||||||| |||||| ||| ||||||    | ||||||||||| |||||    
T  8588199 tttcttgaagagttgtatttggattttactggcttagtggagtgtccctctttggatctgcgttgccataattctctccggaaactttcaataaaaggat 8588100  T
Q  343 ggcgcttctcctccttgcctttg 365  Q
    |||||| || |||||||||||||    
T  8588099 ggcgctcctactccttgcctttg 8588077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 5266571 - 5266527
Alignment:
Q  30 cctcaacacctcccttctttgcaaaaattggagattaatgattgc 74  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||    
T  5266571 cctcaacaccttccttctttgcaaaaattggtgattaatgattgc 5266527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 5297240 - 5297106
Alignment:
Q  27 ctgcctcaacacctcccttctttgcaaaaattggagattaatgattg-caagatgttggaagcatcaattcccaagtgtgataatatgatagagttagat 125  Q
    ||||||||||| || |||||||||||||||||| |||||| |||||| ||||| |||||| || || |||||||||  |||||||||  | ||| ||||     
T  5297240 ctgcctcaacatcttccttctttgcaaaaattgaagattagtgattgccaaga-gttggaggcttcgattcccaaggctgataatattgttgagctagag 5297142  T
Q  126 atacaggaatgtgatagaattttggtaaatgaattg 161  Q
     || | | |||||| |  ||||||||||||||||||    
T  5297141 ctaaaaggatgtgaaaacattttggtaaatgaattg 5297106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 6236220 - 6236146
Alignment:
Q  27 ctgcctcaacacctcccttctttgcaaaaattggagattaatgattgc-aagatgttggaagcatcaattcccaag 101  Q
    ||||||||| |||| |||| |||||||||||||||||||| ||||||| |||| |||||| || ||||||||||||    
T  6236220 ctgcctcaataccttccttgtttgcaaaaattggagattattgattgccaaga-gttggaggcgtcaattcccaag 6236146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 6264177 - 6264130
Alignment:
Q  27 ctgcctcaacacctcccttctttgcaaaaattggagattaatgattgc 74  Q
    |||||| | |||||||||||||||| |||||||||||||| |||||||    
T  6264177 ctgccttatcacctcccttctttgctaaaattggagattattgattgc 6264130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 6521799 - 6521846
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagatt 65  Q
    ||||||||||||| ||||||||| |||||||| |||||| ||||||||    
T  6521799 aaaagggctctgcatcaacaccttccttctttacaaaaactggagatt 6521846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 6521934 - 6521977
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattgga 61  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||    
T  6521934 aaaagggctctgcctcaacaccttccttctttacaaaaactgga 6521977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 6522069 - 6522116
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagatt 65  Q
    ||||||||||||| ||||||||| |||||||| |||||| ||||||||    
T  6522069 aaaagggctctgcatcaacaccttccttctttacaaaaactggagatt 6522116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 6522339 - 6522382
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattgga 61  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||    
T  6522339 aaaagggctctgcctcaacaccttccttctttacaaaaactgga 6522382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 6522474 - 6522521
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagatt 65  Q
    ||||||||||||| ||||||||| |||||||| |||||| ||||||||    
T  6522474 aaaagggctctgcatcaacaccttccttctttacaaaaactggagatt 6522521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 6522609 - 6522652
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattgga 61  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||    
T  6522609 aaaagggctctgcctcaacaccttccttctttacaaaaactgga 6522652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 6522744 - 6522791
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagatt 65  Q
    ||||||||||||| ||||||||| |||||||| |||||| ||||||||    
T  6522744 aaaagggctctgcatcaacaccttccttctttacaaaaactggagatt 6522791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 6522879 - 6522922
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattgga 61  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||    
T  6522879 aaaagggctctgcctcaacaccttccttctttacaaaaactgga 6522922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 6898583 - 6898449
Alignment:
Q  27 ctgcctcaacacctcccttctttgcaaaaattggagattaatgattg-caagatgttggaagcatcaattcccaagtgtgataatatgatagagttagat 125  Q
    |||||||||||||| |||||||||||||| ||| | |||| |||||| ||||| |||| | || ||||||||||||  ||||||||| |  ||| ||||     
T  6898583 ctgcctcaacaccttccttctttgcaaaagttgaaaattattgattgccaaga-gttgcaggcttcaattcccaaggctgataatatcagtgagctagaa 6898485  T
Q  126 atacaggaatgtgatagaattttggtaaatgaattg 161  Q
     || ||  ||||||| | |||||| |||||||||||    
T  6898484 ctaaagagatgtgatggcattttgataaatgaattg 6898449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 6840835 - 6840872
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaa 55  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  6840835 aaaagggctctgcctcaacaccttccttctttacaaaa 6840872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 6840970 - 6841007
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaa 55  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  6840970 aaaagggctctgcctcaacaccttccttctttacaaaa 6841007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 6140790 - 6140707
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgc-aagatgttggaagcatcaattcccaag 101  Q
    ||||| || |||||||| || || |||| ||||||||| |||||||||| ||||||| |||| |||||| || ||||||||||||    
T  6140790 aaaagtgccctgcctcatcatcttccttgtttgcaaaagttggagattattgattgcgaaga-gttggaggcttcaattcccaag 6140707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 6167401 - 6167318
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgc-aagatgttggaagcatcaattcccaag 101  Q
    ||||| ||||||||||| || || |||| ||||||||| ||||| |||| ||||||| |||| |||||| || ||||||||||||    
T  6167401 aaaagtgctctgcctcatcatcttccttgtttgcaaaagttggaaattattgattgcgaaga-gttggaggcttcaattcccaag 6167318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 8588313 - 8588273
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaatt 58  Q
    ||||||||| ||||||||||||| |||||||| ||||||||    
T  8588313 aaaagggctttgcctcaacaccttccttctttacaaaaatt 8588273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 25 - 365
Target Start/End: Complemental strand, 664 - 324
Alignment:
Q  25 ctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatagagttaga 124  Q
    |||||||||||||||| |||| ||| |||||| || | |||| ||||||||| | | |||| ||||||||||||||| ||||||||||||||||||||||    
T  664 ctctgcctcaacaccttccttttttacaaaaactgaatattactgattgcaacaagatggaggcatcaattcccaagagtgataatatgatagagttaga 565  T
Q  125 tatacagga-atgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttgtgataatcagtacaccgagttctccgtggacca 223  Q
    |||| |||| |||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||  | ||||    
T  564 tata-aggagatgtgatagaattttggtaaatgaattgtcgaccagcttgaaaaggttattcctttgtgataatcagtacaccgagttctccccgcacca 466  T
Q  224 aaatctaatcaatattctctttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatctacgttgctatagttctcttgaa 323  Q
    |||| |||||||| ||| |||||||||||||||| | |||||||| |  |||| |||  | ||||||||||||||||||| |||||||| |||||||       
T  465 aaatttaatcaattttccctttcttgaagagttgcaattggattttactggctttgtggaatgtccctctttggatctacattgctataattctctttgg 366  T
Q  324 acactttcaataataggatggcgcttctcctccttgcctttg 365  Q
    | ||| ||||||| |||||||| || ||||||||||||||||    
T  365 agactatcaataaaaggatggcactcctcctccttgcctttg 324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 9294 - 9641
Alignment:
Q  18 aaaagggctctgcctcaacacctcccttctttgcaaaaattggagattaatgattgcaagatgttggaagcatcaattcccaagtgtgataatatgatag 117  Q
    |||||||||||||| |||||||| |||||||| |||||||||   |||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  9294 aaaagggctctgccacaacaccttccttctttacaaaaattgttcattaatgattgcaacaagttggaagcatcaattcccaagtgtgataatatgatag 9393  T
Q  118 agttagatatacaggaatgtgatagaattttggtaaatgaattggcgacaagtttgaaaaggttattcctttgtgataatcagtacaccgagttctccgt 217  Q
    |||||||||||||    ||||||||||||||||||||||||||| |||| || |||||||| ||| |||||||  | |||| |||||| |||||||| ||    
T  9394 agttagatatacaaagttgtgatagaattttggtaaatgaattgccgaccagcttgaaaagtttactcctttggcaaaatcggtacactgagttctctgt 9493  T
Q  218 ggaccaaaatctaatcaatattctctttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatctacgttgctatagttct 317  Q
    |||||||||| |||||||| ||| ||||||||||  |||| | |||||||| |  |||| |||  | |||||||||||||||||||||||||||| ||||    
T  9494 ggaccaaaatttaatcaattttccctttcttgaatcgttgcaattggattttactggctttgtggaatgtccctctttggatctacgttgctataattct 9593  T
Q  318 cttgaaacactttcaataataggatggcgcttctcctccttgcctttg 365  Q
    |||   | ||| ||||||  ||||||||  | ||||||||||||||||    
T  9594 ctttggagactatcaatacaaggatggcattcctcctccttgcctttg 9641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2053 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold2053
Description:

Target: scaffold2053; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 244 - 364
Target Start/End: Original strand, 13 - 133
Alignment:
Q  244 ttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatctacgttgctatagttctcttgaaacactttcaataataggatg 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||   | ||| ||||||| ||||||    
T  13 ttcttgaagagttgaagttggatttcagaggctgtgtaaactgtccctctttggatttacgttgctataattctctttggagactatcaataaaaggatg 112  T
Q  344 gcgcttctcctccttgccttt 364  Q
    || ||  ||||| ||||||||    
T  113 gcactcatcctcgttgccttt 133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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