View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21064_low_11 (Length: 312)
Name: NF21064_low_11
Description: NF21064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21064_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 44705281 - 44705556
Alignment:
| Q |
16 |
atgagtctgtgatgtaacatctgtaacagccgaagaaatcataaaatccttgatcatattttttattttaacaacttgatcggtatcattttattatgtt |
115 |
Q |
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| T |
44705281 |
atgagtccgtgacgcaacatctgtaacaaccgaa---atcataaaatccttgatcatattttttattttaacaacttgatcggtatcattttattatgtt |
44705377 |
T |
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| Q |
116 |
gtaatttaccaataaaacagttacacaacatctgtttttgacagtaacggtgaatacggaaaagaaatgattacgaatcaacaatcataaaaatcttaat |
215 |
Q |
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| T |
44705378 |
gtaatttagcaataaaacagttacacaacatctgtttttgacagtaacggtgaatacggaaaacaaatgattacgaatcaacaatcataaaaatcttaat |
44705477 |
T |
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| Q |
216 |
ataataacgttgtacagcatcgaattcgatttgctaagtgttactcagtgataaagaagaaagaaacggcggcgtacct |
294 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44705478 |
ataataacgttgtacaacatcgaattcgatttgctaagtgttactcagtgataaagaagaaagaaacggcggcgtacct |
44705556 |
T |
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