View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21064_low_2 (Length: 715)
Name: NF21064_low_2
Description: NF21064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21064_low_2 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 181 - 715
Target Start/End: Complemental strand, 34173968 - 34173434
Alignment:
| Q |
181 |
tgtcgtggcaaacttatgtggatgaacatttgatgtgtgatatcgatggcactggccatcacctcaccgcggctgccattctcggccatgacggttctgt |
280 |
Q |
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| T |
34173968 |
tgtcgtggcaaacttatgtggatgaacatttgatgtgtgatatcgatggcactggtcatcacctcaccgcggctgccattctcggccatgacggttctgt |
34173869 |
T |
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| Q |
281 |
ttgggctcagagcacttcattccctcaggtaatatccactcaattcaaatctatttttgtatgtgagcgcgcgcttttttaatatatatgtatgtgtgcg |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34173868 |
ttgggctcagagcacttcattccctcaggtaatatccactcaattcaaatctatttttgtatgtgagcgcgcgcttttttaatatatatgtatgtgtgcg |
34173769 |
T |
|
| Q |
381 |
cgcactttctaatgttcattttgtatcaatgttctcgtcatcacaatgttgctatgtagatctatcataacaactattttcatcttgatttaatattttg |
480 |
Q |
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| T |
34173768 |
cgcactttctaatgttcattttgtatcaatgttctcgtcatcacaatgttgcgatgtagatctatcataacaactattttcatcttgatttaatattttg |
34173669 |
T |
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| Q |
481 |
tttcaaattttaattcacatttgagacatgtggcttttcaatatcacatcgtgaacattacttttatttgatttatagattgatcaatctatcgatttaa |
580 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34173668 |
tttcaaattttaattcacatttgagacatgtggcttttcaatatcacatcgtgaacattacttttatttgatttatagattgatcaatctatcgatttaa |
34173569 |
T |
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| Q |
581 |
tcannnnnnnatttgtgtatgctataaccgttctagtaacgattatttcgacaagagtaaagacgaaatcttagacaaattgtgctataggtgttaggat |
680 |
Q |
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| T |
34173568 |
tcatttttttatttgtgtatgctataaccgttctagtaacgattatttcgacaagagtaaagacgaaatcttagacaaattgtgctataggtgttaggat |
34173469 |
T |
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| Q |
681 |
ctgttcgtttctttgtgtcaaattgagttgataat |
715 |
Q |
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| T |
34173468 |
ctgttcgtttctttgtgtcaaattgagttgataat |
34173434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 34174129 - 34174072
Alignment:
| Q |
18 |
gaatggagagaaaaactgattgtctatcataaacaaattattaaagcattctcaccaa |
75 |
Q |
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| T |
34174129 |
gaatggagagaaaaactgattgtctatcataaacaaattattaaagcattctcaccaa |
34174072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 181 - 311
Target Start/End: Original strand, 43051410 - 43051540
Alignment:
| Q |
181 |
tgtcgtggcaaacttatgtggatgaacatttgatgtgtgatatcgatggcactggccatcacctcaccgcggctgccattctcggccatgacggttctgt |
280 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||| |||||||| || || ||||| | || |||||||| | |||||||| || ||||| |
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| T |
43051410 |
tgtcgtggcaaacttacgttgatgaacatttgatgtgtgatattgatggcaccggacaccacctatctgccgctgccatcattggccatgatggctctgt |
43051509 |
T |
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| Q |
281 |
ttgggctcagagcacttcattccctcaggta |
311 |
Q |
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||||||||||||| |||| |||||||||||| |
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| T |
43051510 |
ttgggctcagagctcttccttccctcaggta |
43051540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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