View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21064_low_5 (Length: 531)
Name: NF21064_low_5
Description: NF21064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21064_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 382
Target Start/End: Original strand, 5805242 - 5805613
Alignment:
| Q |
11 |
catcatcatttttacatattcatactgtcctaccacataaaccccattttcgagcttgttaatcatctctcctccatcaattttcttctttctcaacaag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
5805242 |
catcatcatttttacatattcatactgtcctaccacataaatcccattttctagcttgttaatcctctctcctccatcaattttcttctttctcagcaag |
5805341 |
T |
|
| Q |
111 |
atcaaaagattgttcttgttgtttcttctctcctccatatttgagcttgcgaattctctctcctccgtcaattttcttctttctcagcaatatcaaaaga |
210 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5805342 |
atcaaaagattgttgttgttgtttcttctctcctccatttttgagcttgccaattctctctcctccgtcagttttcttctttctcagcaatatcaaaaga |
5805441 |
T |
|
| Q |
211 |
ttgagggatatactttctgcatttgtttctctattatatgtatggatctgtttaatggatatgggttgctcgaaattgcagatccgaatgaaggagggag |
310 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5805442 |
ttaagggatatactttctgcatttgtttctctattatatgtatggatctgtttaatagatatgggttgctcgaaattgcagatccgaatgaaggagggag |
5805541 |
T |
|
| Q |
311 |
tatgtgaattgttgtttatgaaattttggtggatatgtttattgttgcatattcaaaatttcagatatgaaa |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
5805542 |
tatgtgaattgttgtttatgaaattttggtggatatgtttattgttgcatattcgaaatttcagatctgaaa |
5805613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 28 - 382
Target Start/End: Original strand, 36180015 - 36180370
Alignment:
| Q |
28 |
attcatactgtcctaccacataaaccccattttcgagcttgttaatcatctctcctccatcaattttcttcttt-ctcaacaagatcaaaagattgttct |
126 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| | |
|
|
| T |
36180015 |
attcatactgccctaccacataaaccccattttcgagcttgttaatcctctctcctccatcaattttcttcttttctcagcaagatcaaaagattgttgt |
36180114 |
T |
|
| Q |
127 |
tgttgtttcttctctcctccatatttgagcttgcgaattctctctcctccgtcaattttcttctttctcagcaatatcaaaagattgagggatatacttt |
226 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36180115 |
tgttgtttcttctctcctccattttcgagcttgccaattctctctcctccgtcaattttcttctttctcagcaatatcaaaagattgagggatatacttt |
36180214 |
T |
|
| Q |
227 |
ctgcatttgtttctctattatatgtatggatctgtttaatggatatgggttgctcgaaattgcagatccgaatgaaggagggagtatgtgaattgttgtt |
326 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36180215 |
ctgcatttgtttttctattatatgtatggatctgtttaatggatatgggttgctcgaaattgcagatccgaatgaaggagggagtatgtgaattgttgtt |
36180314 |
T |
|
| Q |
327 |
tatgaaattttggtggatatgtttattgttgcatattcaaaatttcagatatgaaa |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
36180315 |
tatgaaattttggtggatatgtttattgttgcatattcgaaatttcagatctgaaa |
36180370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 28 - 382
Target Start/End: Original strand, 11130473 - 11130830
Alignment:
| Q |
28 |
attcatactgtcctaccacataaaccccattttcgagcttgttaatcatctctcctccatcaattttcttctttctcaacaagatcaaaagattgttctt |
127 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| || |
|
|
| T |
11130473 |
attcatactgccctaccacataaaccccattttcgagcttgttaatcctctctcctccatcaattttcttctttcttagcaagatcaaaagattgttgtt |
11130572 |
T |
|
| Q |
128 |
gt---tgtttcttctctcctccatatttgagcttgcgaattctctctcctccgtcaattttcttctttctcagcaatatcaaaagattgagggatatact |
224 |
Q |
| |
|
|| ||||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11130573 |
gttgttgtttcttctctcctccattttcgagtttgccaattctctctcctccgtcaattttcttctttctcagcaatatcaaatgattgagggatatact |
11130672 |
T |
|
| Q |
225 |
ttctgcatttgtttctctattatatgtatggatctgtttaatggatatgggttgctcgaaattgcagatccgaatgaaggagggagtatgtgaattgttg |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11130673 |
ttctgcatttgtttctctattatatgtatggatctgtttaatggatatgggttgctcgaaattgcagatccaaatgaaggagggagtatgtgaattgttg |
11130772 |
T |
|
| Q |
325 |
tttatgaaattttggtggatatgtttattgttgcatattcaaaatttcagatatgaaa |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
11130773 |
tttatgaaattttggtggatatgtttattgttgcatattcgaaatttcagatctgaaa |
11130830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 36889188 - 36889149
Alignment:
| Q |
275 |
gttgctcgaaattgcagatccgaatgaaggagggagtatg |
314 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36889188 |
gttgttcgaaattgaagatccgaatgaaggagggagtatg |
36889149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University