View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21064_low_6 (Length: 500)
Name: NF21064_low_6
Description: NF21064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21064_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 235 - 490
Target Start/End: Original strand, 31733544 - 31733799
Alignment:
| Q |
235 |
agatggagatcaataaaaagttgtgcatcaaatcaaatcatcaagagagattttgcggtaaccagttcagctttaagcttaatacaaattatagtgttgc |
334 |
Q |
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| T |
31733544 |
agatggagatcaataaaaagttgtgcatcaaatcaaatcatcaagagagattttgcggtaaccagttcagctttaagcttaatacaaattatagtgttgc |
31733643 |
T |
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| Q |
335 |
ctgattcatacacatgacaaacaatacgtggttgttggtgtcatttttgttatcttgtaatgatgacattaaaaccaatgtatgtcagtgaaacctacga |
434 |
Q |
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| T |
31733644 |
ctgattcatacacatgacaaacaatatgtggatgttggtgtcatttttgttatcttgtaatgatgacattaaaaccaatgtatgtcagtgaaacctacga |
31733743 |
T |
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| Q |
435 |
cgaatgacagaaagagaatacatccatgatgatatctaaaggatgttatgatgatg |
490 |
Q |
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| T |
31733744 |
cgaatgacagaaagagaatacatccatgatgatatctaaaggatgttatgatgatg |
31733799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 235 - 490
Target Start/End: Complemental strand, 32848631 - 32848378
Alignment:
| Q |
235 |
agatggagatcaataaaaagttgtgcatcaaatcaaatcatcaagagagattttgcggtaaccagttcagctttaagcttaataca--------aattat |
326 |
Q |
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| T |
32848631 |
agatggagatcaataaaaagttgtacatcaaatca-----tc--gagagattttgtggttaacagtccagctttaagcttaatccatgataatgaattat |
32848539 |
T |
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| Q |
327 |
agtgttgcctgattcatacacatgacaaacaatacgtggttgttggtgtcatttttgttatcttgtaatgatgacattaaaaccaatgtatgtcagtgaa |
426 |
Q |
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| T |
32848538 |
agtgttgtctgattcatacacatgataaacattttatggttgttggtgtcatttttgttatcttgtaatgatgacattaaaaccaatgcatgtcggtgaa |
32848439 |
T |
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| Q |
427 |
acctacgacgaatgacagaaagagaatacatccatgatgatatctaaaggatgttatgatgatg |
490 |
Q |
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| T |
32848438 |
atat---acgaatgaaggagagagaaaacatccatgatgatatctaaaggatgttctgatgatg |
32848378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 32849679 - 32849588
Alignment:
| Q |
89 |
taatagaagaaaatttgtcatgaacattagaaatcttgcgtcatgtacctttcaaacttttgtttacatta-tttcatacaaacataacaata |
180 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||||||||||||| ||||||| ||||||||||||| |
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| T |
32849679 |
taatagaagaaaatttgccatgaacattagaaatcttgcgttaagtacctttcaaac-tttgtttacattattttcatagaaacataacaata |
32849588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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