View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21064_low_9 (Length: 407)

Name: NF21064_low_9
Description: NF21064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21064_low_9
NF21064_low_9
[»] chr6 (4 HSPs)
chr6 (27-172)||(7326151-7326296)
chr6 (253-391)||(7326481-7326612)
chr6 (188-253)||(7326393-7326453)
chr6 (195-238)||(6922703-6922746)
[»] chr4 (5 HSPs)
chr4 (174-238)||(35130658-35130723)
chr4 (188-238)||(13538317-13538367)
chr4 (196-237)||(49479453-49479494)
chr4 (174-238)||(17882291-17882355)
chr4 (175-238)||(35010431-35010495)
[»] scaffold0166 (1 HSPs)
scaffold0166 (195-239)||(35852-35896)
[»] chr7 (2 HSPs)
chr7 (174-238)||(30746010-30746074)
chr7 (188-238)||(9667293-9667343)
[»] chr5 (1 HSPs)
chr5 (195-239)||(24793469-24793513)
[»] chr2 (1 HSPs)
chr2 (195-235)||(29097888-29097928)
[»] chr3 (3 HSPs)
chr3 (174-240)||(32594558-32594625)
chr3 (195-238)||(52093594-52093637)
chr3 (195-238)||(52093749-52093792)
[»] chr8 (1 HSPs)
chr8 (205-239)||(2276274-2276308)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 7326151 - 7326296
Alignment:
Q  27 attgaggatgtttataacaaaataagtatttttatttcaaaagcaaaataaggcataatctaaaatgttgtttgctgcaaataagtgaaattagcttcat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  7326151 attgaggatgtttataacaaaataagtatttttatttcaaaagcaaaataaggcctaatctaaaatgttgtttgctgcaaataagtgaagttagcttcat 7326250  T
Q  127 ttcataccgaaaaatcaagcacattgacaacgcaagctattagcac 172  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  7326251 ttcataccgaaaaatcaagcacattgacaacgcaagctattggcac 7326296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 253 - 391
Target Start/End: Original strand, 7326481 - 7326612
Alignment:
Q  253 acaaacaaaaatggcatcagtaaatgttttttccatgacataaataaggatagttttatcccttcatgtcagttagctacatacatacatgtaatgtaac 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       ||||||||||||||||||||    
T  7326481 acaaacaaaaatggcatcagtaaatgttttttccatgacataaataaggataattttatcccttcatgtcagt-------atacatacatgtaatgtaac 7326573  T
Q  353 aaatttagacaaatgttcataaaacaaatagcaacaaag 391  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7326574 aaatttagacaaatgttcataaaacaaatagcaacaaag 7326612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 7326393 - 7326453
Alignment:
Q  188 ccctactcaaattattcctgatagctaccaactgaactatacttacgggacacacttatttcttca 253  Q
    |||| |||||||||| |||| ||||||||||||||     ||||||||||||||||||||||||||    
T  7326393 ccctgctcaaattatccctggtagctaccaactga-----acttacgggacacacttatttcttca 7326453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 6922703 - 6922746
Alignment:
Q  195 caaattattcctgatagctaccaactgaactatacttacgggac 238  Q
    |||||||||| || |||||||||||||||||| |||||||||||    
T  6922703 caaattattcatggtagctaccaactgaactacacttacgggac 6922746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 35130658 - 35130723
Alignment:
Q  174 ggttcgaaccccggccc-tactcaaattattcctgatagctaccaactgaactatacttacgggac 238  Q
    ||||||||||||||||| | | ||||||||  ||| |||||||||||||||||| |||||||||||    
T  35130658 ggttcgaaccccggcccctgcacaaattatctctggtagctaccaactgaactacacttacgggac 35130723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 13538317 - 13538367
Alignment:
Q  188 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 238  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  13538317 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 13538367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 49479494 - 49479453
Alignment:
Q  196 aaattattcctgatagctaccaactgaactatacttacggga 237  Q
    |||||||| |||||||||||||||||||||| ||||| ||||    
T  49479494 aaattatttctgatagctaccaactgaactacacttatggga 49479453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 17882291 - 17882355
Alignment:
Q  174 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 238  Q
    ||||||||||| | |||| | |||||||| | ||| |||||| |||||||||| |||||||||||    
T  17882291 ggttcgaaccctgcccctgcacaaattatccatgaaagctactaactgaactacacttacgggac 17882355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 35010431 - 35010495
Alignment:
Q  175 gttcgaaccccggc-cctactcaaattattcctgatagctaccaactgaactatacttacgggac 238  Q
    |||||||||||| | ||| | ||||||||  |||||||||||||||||| ||| |||||||||||    
T  35010431 gttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagctaaacttacgggac 35010495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 35896 - 35852
Alignment:
Q  195 caaattattcctgatagctaccaactgaactatacttacgggaca 239  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  35896 caaattatctctgatagctaccaactgaactatacttacgagaca 35852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 30746010 - 30746074
Alignment:
Q  174 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 238  Q
    ||||| ||||||| |||| | ||||||||||||||||| ||||||||||  |||||||| |||||    
T  30746010 ggttcaaaccccgcccctgcacaaattattcctgatagttaccaactgagttatacttatgggac 30746074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 9667293 - 9667343
Alignment:
Q  188 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 238  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  9667293 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 9667343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 24793513 - 24793469
Alignment:
Q  195 caaattattcctgatagctaccaactgaactatacttacgggaca 239  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  24793513 caaattatctctgatagctaccaactgaactatacttacgagaca 24793469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 29097928 - 29097888
Alignment:
Q  195 caaattattcctgatagctaccaactgaactatacttacgg 235  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  29097928 caaattattcctgatagttaccaactgaactacacttacgg 29097888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 32594625 - 32594558
Alignment:
Q  174 ggttcgaaccccggcc-ctactcaaattattcctgatagctaccaactgaactatacttacgggacac 240  Q
    ||||||||||||| || |||| ||||||||||||  || ||||||||||||||| |||||||| ||||    
T  32594625 ggttcgaaccccgaccactacacaaattattcctattaactaccaactgaactacacttacggaacac 32594558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 52093637 - 52093594
Alignment:
Q  195 caaattattcctgatagctaccaactgaactatacttacgggac 238  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093637 caaattatccctgatagctaccaactgagccatacttacgggac 52093594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 52093792 - 52093749
Alignment:
Q  195 caaattattcctgatagctaccaactgaactatacttacgggac 238  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093792 caaattatccctgatagctaccaactgagccatacttacgggac 52093749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 2276308 - 2276274
Alignment:
Q  205 ctgatagctaccaactgaactatacttacgggaca 239  Q
    |||||||||||||||||||||||||||||| ||||    
T  2276308 ctgatagctaccaactgaactatacttacgagaca 2276274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University