View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21065_high_1 (Length: 774)

Name: NF21065_high_1
Description: NF21065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21065_high_1
NF21065_high_1
[»] chr1 (1 HSPs)
chr1 (40-774)||(52577989-52578725)


Alignment Details
Target: chr1 (Bit Score: 646; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 40 - 774
Target Start/End: Complemental strand, 52578725 - 52577989
Alignment:
Q  40 ctcaatatggtattctatattgctctttcagagaacgtttgttggggttgannnnnnnagtgtatttcaagaggtttatcttcaaacaaatgatccacgc 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  52578725 ctcaatatggtattctatattgctctttcagagaacgtttgttggggttgatttttttagtgtatttcaagaggtttatcttcaaacaaatgatccacgc 52578626  T
Q  140 gtaaccaatattgtgtcattttctgatgccatcggtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacact 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52578625 gtaaccaatattgtgtcattttctgatgccatcggtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacact 52578526  T
Q  240 tctgtgttaaattccacttcannnnnnnnnnn---aatactacgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatttgt 336  Q
    |||||||||||||| ||||||              |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  52578525 tctgtgttaaattctacttcattttttttttttttaatactgcgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatt-gt 52578427  T
Q  337 gaaataaatcatgccacataaattcaaaggttggctatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgctt 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52578426 gaaataaatcatgccacataaattcaaaggttggctatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgctt 52578327  T
Q  437 ctaaagaatcaagagttaatataatatggatagcattctggctttcttcgtgtatttcaggatagttgaattcccgtttgtgtttgtgcttgtcattcaa 536  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  52578326 ctaaagaatcaagagttaatataatatggatagcattctggctttcttcgtgtatatcaggatagttgaattcccgtttgtgtttgtgcttgtcattcaa 52578227  T
Q  537 aaaacccttatatcatatagctgttcatatattttactattttattctctgatctattgattggtttttcggtagagtcaattgatgttgtttgatctat 636  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52578226 aaaacccttatatcatatagctgttcatatattttactattttattctctgatctattgattggtttttcggtagagtcaattgatgttgtttgatctat 52578127  T
Q  637 atgtctgaccctatcttgtgggacaaagacttccttgatgctctcgttcttgttcttatactcatgtccttcaatttaaataggcagcagcatccattgg 736  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52578126 atgtccgaccctatcttgtgggacaaagacttccttgatgctctcgttcttgttcttatactcatgtccttcaatttaaataggcagcagcatccattgg 52578027  T
Q  737 agatggaaaaagaatcctttttaggtttgacagagctg 774  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52578026 agatggaaaaagaatcctttttaggtttgacagagctg 52577989  T

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