View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21065_high_2 (Length: 664)
Name: NF21065_high_2
Description: NF21065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21065_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 152 - 648
Target Start/End: Original strand, 26602674 - 26603171
Alignment:
| Q |
152 |
ttaaactattaaatgtgttttttattttgcaatgataaaaatttcttttgaataaattgactttataaaatttattctaaaaaagtggaagagaaatgct |
251 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26602674 |
ttaagctattaaatgtgttttttattttgcattgataaaaatttcttttgaataaattgactttataaaatttattctaaaaaagtggaagagaaatgct |
26602773 |
T |
|
| Q |
252 |
agaaagttgtaaggaagaggtgtaaatataatggtttgcatccataagtacaactgcaaggaactgagattttacacacgcacacactaacatttatgtg |
351 |
Q |
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| T |
26602774 |
acaaagttgtaaggaagaggtgtaaatataatggtttgcatccataagtacaactgcaaggaactgagattttacacacgcacacactaacatttatgtg |
26602873 |
T |
|
| Q |
352 |
taaca--tgtccatcatcttcgttcagtatacagtgtactggattattattattatgtttatttagatattacagtgtactggatttgataagggtttaa |
449 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26602874 |
taacatttgtccatcatcttcgttcagtatacagtgtactggattattattattatgtttatttagatattacagtgtactggatttgataagggtttaa |
26602973 |
T |
|
| Q |
450 |
ataaatgactatatactgttaccaggttttgtgcacgatcaatcaatatctatacagcaatgcattgcagcacatgtacccaaaaaagccatacattgca |
549 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26602974 |
ataaatgactatatactgttaccaggttttgtgcacgatcaatcaatatctatacagcaatgcattgcagcacatgtacccaaaaaagccataca-tgca |
26603072 |
T |
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| Q |
550 |
ccacagcaattcttcctccagcgacacaatagacagttatatatgtgtatattatgtggtcctgctagtttgactatgatctatacctgccaacttttg |
648 |
Q |
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| T |
26603073 |
ccacagcaattcttcctccagcgacacaatagacagttatatatgtgtatattatgtggtcctgctagtttgactatgatctatacctgccaacttttg |
26603171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 26602291 - 26602438
Alignment:
| Q |
15 |
tacacaaaattttggctcctagaaataaaatctacagctaagaattcctttagaaa-------cccttcttcatatccttcattactagagttgcatcca |
107 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| || ||||||||||||||||||||| |||||| ||||| |
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| T |
26602291 |
tacacaaaattttggttcctagaaataatatctacagctaagaattcccttagaaagtagaaaccattcttcatatccttcattactggagttgaatcca |
26602390 |
T |
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| Q |
108 |
acattccaactgctgtaaatacaaagtacaatggtttctatgaattaa |
155 |
Q |
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| T |
26602391 |
acattccaactgctgtaaatacaaagtacaatggtttctatgaattaa |
26602438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 254 - 343
Target Start/End: Original strand, 18746465 - 18746557
Alignment:
| Q |
254 |
aaagttgtaaggaagaggtgtaaata---taatggtttgcatccataagtacaactgcaaggaactgagattttacacacgcacacactaaca |
343 |
Q |
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| T |
18746465 |
aaagttgcaaggaagaggtgtaaataatataatgatttgcttccataagtacaactgcaaggaactgagattttacacacgcacacaccaaca |
18746557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 18746289 - 18746388
Alignment:
| Q |
140 |
ggtttctatgaattaaactattaaatgtgttttttattttgcaatgataaaaatttcttttgaataaatt-gactttataaaatttattctaaaaaagtg |
238 |
Q |
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|||||||||||| ||| |||||||||||||| |||||||| ||| |||||||||| |||||||||||||| | ||||||||||| | |||||||||||| |
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| T |
18746289 |
ggtttctatgaactaagctattaaatgtgttatttattttacaaagataaaaattacttttgaataaattaaattttataaaattgactctaaaaaagtg |
18746388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 254 - 345
Target Start/End: Complemental strand, 9390707 - 9390613
Alignment:
| Q |
254 |
aaagttgtaaggaagaggtgtaaata---taatggtttgcatccataagtacaactgcaaggaactgagattttacacacgcacacactaacatt |
345 |
Q |
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|||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||||||||||||||||||| |||||||||| |||||| |
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| T |
9390707 |
aaagttgtaaggaagaggtgtaaataatataatgatttgcttccataagtacaattgcaaggaactgagattttacagacgcacacaccaacatt |
9390613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 254 - 344
Target Start/End: Complemental strand, 9390423 - 9390330
Alignment:
| Q |
254 |
aaagttgtaaggaagaggtgtaaata---taatggtttgcatccataagtacaactgcaaggaactgagattttacacacgcacacactaacat |
344 |
Q |
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|||||||||||||||||||||||||| ||||| |||| || |||||||||| |||||||||||||||||||||| || ||||||| ||||| |
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| T |
9390423 |
aaagttgtaaggaagaggtgtaaataatataatgatttgtttctataagtacaattgcaaggaactgagattttacagacacacacaccaacat |
9390330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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