View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21065_high_6 (Length: 359)
Name: NF21065_high_6
Description: NF21065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21065_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 33554219 - 33553875
Alignment:
| Q |
1 |
ctcaaagtcgcttgcacaacaaacttctgttgcaattgttgacagtgatg---ggacattcgtcggtgagatatcacccttcacccttgcttgttgtgat |
97 |
Q |
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| T |
33554219 |
ctcaaagtcgcttgcacaacaaacttctgttgcaattgttgacagtgatgatgggacattcgtcggtgagatatcacccttcacccttgcttgttgtgat |
33554120 |
T |
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| Q |
98 |
gagacggttgctgccgcgatcacagctttgtctgcaggggacttaatggcctacattgactgcggtgccccaccagaggatcttgtgagatttgtaaagg |
197 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
33554119 |
gagacggttgctgtcgcgatcacagctttgtctgcaggggacttgatggcctacattgactgtggtgccccaccagaggatcttgtgagacttgtaaagg |
33554020 |
T |
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| Q |
198 |
caaggttgaaggagaagaatttggagaaattactacaagagtttacaattttgacttccttaacgagtgaggggtcgacctcgtcttcctctgatgagga |
297 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
33554019 |
caaggttgaaggagaagaatttggagaaattgctacaaaagtttacaattttgacttccttaaccagtgaggtgtcgacctcgtcttcctctgatgagga |
33553920 |
T |
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| Q |
298 |
gagtctgacgaggtcaggaaatcacgcaaggtcatcgagctattc |
342 |
Q |
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| T |
33553919 |
gggtctgacgaggtcaggaaagcacgcaaggtcatcgagctattc |
33553875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 33540998 - 33540697
Alignment:
| Q |
1 |
ctcaaagtcgcttgcacaacaaacttctgttgcaattgttgacagtgatgggacattcgtcggtgagatatcacccttcacccttgcttgttgtgatgag |
100 |
Q |
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||||||||| || |||||||||||||||| |||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| |
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| T |
33540998 |
ctcaaagtccctcacacaacaaacttctgtcgcaattgtcgacggtgatgggacattcatcggtgagatatcacccttcacacttgcatgttgtgatgag |
33540899 |
T |
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| Q |
101 |
acggttgctgccgcgatcacagctttgtctgcaggggacttaatggcctacattgactgcggtgccccaccagaggatcttgtgagatttgtaaaggcaa |
200 |
Q |
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|||||||| ||||| |||||| ||||||| ||||||| ||| ||||||||||||||||| ||| ||| || |||||||| || || |||||||||||| |
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| T |
33540898 |
acggttgcggccgccatcacaactttgtccgcagggggcttgatggcctacattgactgtggtcgcccccctgaggatctagtcagggttgtaaaggcaa |
33540799 |
T |
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| Q |
201 |
ggttgaaggagaagaatttggagaaattactacaagagtttacaattttgacttccttaacgagtgaggggtcgacctcgtcttcctctgatgaggagag |
300 |
Q |
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|||||||||||||||||||||| ||| | || |||||||||||| || |||||||||| || |||| ||| |||| |||||||||||||||||||| |
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| T |
33540798 |
ggttgaaggagaagaatttggaaaaactgctgcaagagtttacacttatgacttccttgacaggtgatatgtcatcctcctcttcctctgatgaggagag |
33540699 |
T |
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| Q |
301 |
tc |
302 |
Q |
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|| |
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| T |
33540698 |
tc |
33540697 |
T |
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