View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21065_low_10 (Length: 250)
Name: NF21065_low_10
Description: NF21065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21065_low_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 33554488 - 33554245
Alignment:
| Q |
7 |
ggagcacagaatcttgtggtgccaattttgcaaacaaaaagaggtggaatttcaaggagaaaacagcaacaaaagtcatcaacaatcaacaaccacaacg |
106 |
Q |
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| T |
33554488 |
ggagcacagaatcttgtggtgccaattttgcaaacaaaaagaggtggaatttcaaggagaaaacagcaacaaaagtcatcaacaatcaacaaccacaacg |
33554389 |
T |
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| Q |
107 |
gtgttgaattctgttggttaacacaagaggatgtgatcaggttcttgcttggttccattggcctcttcactccactccctgcatactccattgattctct |
206 |
Q |
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| T |
33554388 |
gtgttgaattctgttggttaacacaagaggatgtgatcaggttcttgcttggttccattggcctcttcactccactccctgcatactccattgattctct |
33554289 |
T |
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| Q |
207 |
cgatatcatcagccccgatgtgctcgcaatcgattactattccc |
250 |
Q |
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| T |
33554288 |
cgatatcatcagccccgatgtgctcgcaatcgattactattccc |
33554245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 33541264 - 33541024
Alignment:
| Q |
10 |
gcacagaatcttgtggtgccaattttgcaaacaaaaagaggtggaatttcaaggagaaaacagcaacaaaagtcatcaacaatcaacaaccacaacggtg |
109 |
Q |
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| T |
33541264 |
gcacaaaatcttgtggtgccaatttcgcagacaaaaaaaggtggcctttcaaggagaaaactgcagcagaagtcattaacaatcaacagccacaatggtg |
33541165 |
T |
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| Q |
110 |
ttgaattctgttggttaacacaagaggatgtgatcaggttcttgcttggttccattggcctcttcactccactccctgcatactccattgattctctcga |
209 |
Q |
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| T |
33541164 |
ttgagttctgctggttaacacaagaggatgtgatcaggttcttgcttggttccattggccgcttcagtgcactccctgcacaatccatcgatcgtctcaa |
33541065 |
T |
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| Q |
210 |
tatcatcagccccgatgtgctcgcaatcgattactattccc |
250 |
Q |
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| T |
33541064 |
tattatcagctcggatgtgctctccattgattactcttccc |
33541024 |
T |
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