View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21065_low_11 (Length: 249)
Name: NF21065_low_11
Description: NF21065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21065_low_11 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 42917797 - 42918033
Alignment:
| Q |
1 |
gcctcacaaaatggatttgatattcgtttggtgcgtcaaccaccaaactctcctgatgtaaatgttttagatcttggtttctttaggtcagttcaagcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42917797 |
gcctcacaaaatggatttgatattcgtttggtgcgtcaaccaccaaactctcctgatttaaatgttttagatcttggtttctttaggtcaattcaagcct |
42917896 |
T |
|
| Q |
101 |
tacaacacaagaagtctcctaactctgttgatgatcttgtggatgcagttcaaaagtcatttgaagagtatgacattatcctgtcaaatcgtatattttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42917897 |
tacaacacaagaagtctcctaactctgttgatgatcttgtggatgcagttcaaaagtcatttgaagagtatgacactatcctgtcaaatcgtatattttt |
42917996 |
T |
|
| Q |
201 |
atcacttcaatcatgtatgattgaaatcatgaaagta |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
42917997 |
atcacttcaatcatgtatgattgaaatcatgaaagta |
42918033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 23254687 - 23254923
Alignment:
| Q |
1 |
gcctcacaaaatggatttgatattcgtttggtgcgtcaaccaccaaactctcctgatgtaaatgttttagatcttggtttctttaggtcagttcaagcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
23254687 |
gcctcacaaaatggatttgatattcgtttggtgcgtcaaccaccaaactctcctgatttaaatgtttaagatcttggtttctttaggtcaattcaagcct |
23254786 |
T |
|
| Q |
101 |
tacaacacaagaagtctcctaactctgttgatgatcttgtggatgcagttcaaaagtcatttgaagagtatgacattatcctgtcaaatcgtatattttt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
23254787 |
tacaacacaagaagtctcctaactctgttgatgatcttgtggatgcagttcaaaagtcatttgaagagtatgacactatcctgtcaaatcgtatattttt |
23254886 |
T |
|
| Q |
201 |
atcacttcaatcatgtatgattgaaatcatgaaagta |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23254887 |
atcacttcaatcatgtatgattgaaatcatgaaagta |
23254923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 36913589 - 36913358
Alignment:
| Q |
4 |
tcacaaaatggatttgatattcgtttggtgcgtcaaccaccaaactctcctgatgtaaatgttttagatcttggtttctttaggtcagttcaagccttac |
103 |
Q |
| |
|
||||||||||||||||||||||| | || |||| || |||||||||| ||| ||||| |||| |||||||| || || || | ||||| | |||| |
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|
| T |
36913589 |
tcacaaaatggatttgatattcgactaatgtgtcagcctgcaaactctccagatttaaatattttggatcttggatttttcagagctattcaatctttac |
36913490 |
T |
|
| Q |
104 |
aacacaagaagtctcctaactctgttgatgatcttgtggatgcagttcaaaagtcatttgaagagtatgacattatcctgtcaaatcgtatatttttatc |
203 |
Q |
| |
|
|||| |||||| | ||||| |||||||| || |||||| |||| ||| || ||||||||||| ||| | | || |||||||||||||||||| |
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|
| T |
36913489 |
aacataagaaggcacctaaatctgttgacgagcttgtgaatgcggttgtgaaatcatttgaagaatattcggtggtgctctcaaatcgtatatttttaag |
36913390 |
T |
|
| Q |
204 |
acttcaatcatgtatgattgaaatcatgaaag |
235 |
Q |
| |
|
| |||| |||||||||||||||||||||| |
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|
| T |
36913389 |
tttgcaattgtgtatgattgaaatcatgaaag |
36913358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 53535607 - 53535843
Alignment:
| Q |
1 |
gcctcacaaaatggatttgatattcgtttggtgcgtcaaccaccaaactctcctgatgtaaatgttttagatcttggtttctttaggtcagttcaagcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
53535607 |
gcctcacaaaatggatttgatattcgtttggtgcgtcaaccaccaaactctcctgatttaaatgtttaagatcttggtttctttaggtcaattcaagcct |
53535706 |
T |
|
| Q |
101 |
tacaacacaagaagtctcctaactctgttgatgatcttgtggatgcagttcaaaagtcatttgaagagtatgacattatcctgtcaaatcgtatattttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
53535707 |
tacaacacaagaagtctcctaactctgttgatgatcttgtggatgcagttcaaaagtcatttgaagagtatgacactatcctgtcaaatcgtatattttt |
53535806 |
T |
|
| Q |
201 |
atcacttcaatcatgtatgattgaaatcatgaaagta |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53535807 |
atcacttcaatcatgtatgattgaaatcatgaaagta |
53535843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 10328585 - 10328659
Alignment:
| Q |
12 |
tggatttgatattcgtttggtgcgtcaaccaccaaactctcctgatgtaaatgttttagatcttggtttctttag |
86 |
Q |
| |
|
||||||||||||||| || || ||||||| ||||| ||||||||| ||||||| ||||| ||||| || ||||| |
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|
| T |
10328585 |
tggatttgatattcgcttaatgtgtcaacctccaaattctcctgatctaaatgtcttagaccttgggttttttag |
10328659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 4755341 - 4755577
Alignment:
| Q |
1 |
gcctcacaaaatggatttgatattcgtttggtgcgtcaaccaccaaactctcctgatgtaaatgttttagatcttggtttctttaggtcagttcaagcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
4755341 |
gcctcacaaaatggatttgatattcgtttggtgcgtcaaccaccaaactctcctgatttaaatgttttagatcttggtttctttaggtcaattcaagcct |
4755440 |
T |
|
| Q |
101 |
tacaacacaagaagtctcctaactctgttgatgatcttgtggatgcagttcaaaagtcatttgaagagtatgacattatcctgtcaaatcgtatattttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4755441 |
tacaacacaagaagtctcctaactctgttgatgatattgtggatgcagttcaaaagtcatttgaagagtatgacactatcctgtcaaatcgtatattttt |
4755540 |
T |
|
| Q |
201 |
atcacttcaatcatgtatgattgaaatcatgaaagta |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4755541 |
atcacttcaatcatgtatgattgaaatcatgaaagta |
4755577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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