View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21065_low_3 (Length: 607)
Name: NF21065_low_3
Description: NF21065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21065_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 16 - 597
Target Start/End: Original strand, 43558947 - 43559533
Alignment:
| Q |
16 |
tctgcctccgacgggacaaaagccaagactacacaatcattcccccacaaacatttgtgtcgataagtgcttcgtcctgtgtcataacttcatttggggg |
115 |
Q |
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| T |
43558947 |
tctgcctccgacgggacaaaagccaagactacacaatcattcccccacaaacatttgtgtcgataagtgcttcgtcctgtgtcataacttcatttggggg |
43559046 |
T |
|
| Q |
116 |
aagtttcggtgggcttgttctgtattatttttgttttggcaattgaac---aataaattacgaaagtgaaagaatatcatgtactgactatctaactacc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43559047 |
aagtttcggtgggcttgttctgtattatttttgttttggcaattgaacgaaaataaattacgaaagtgaaagaatatcatgtactgactatctaactacc |
43559146 |
T |
|
| Q |
213 |
tgcaaattgaacctttttcttggcattctttacttgtcccttctaaccagtcaagcttgtctgtgggtgttgacctgtcaaacaagatatattcaaattt |
312 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43559147 |
tgcaaattgaacctttttcttggcattctttaattgtcccttctaaccagtcaagcttgtctgtgggtgttgacctgtcaaacaagatatattcaaattt |
43559246 |
T |
|
| Q |
313 |
aattagaaaccctagaggtattaatatcattgagattttggtttgtaatttgcagttggtagtaaattgaatgtaaattttaacacaatggttatttaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43559247 |
aattagaaaccctagaggtattaatatcattgagattttggtttgtaatttgcagttggtagtaaattgaatgtaaattttaacacaatggttatttaat |
43559346 |
T |
|
| Q |
413 |
tagcataagtaattattattaggttgcaaaatccatca-----tactttgcaacaggatatgtcattccaaattagatgttttagatgtactacaaaaat |
507 |
Q |
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| T |
43559347 |
tagcataagtaattattattaggttgcaaaatccatcatactgtactttgcaacaggatatgtcattccaaattagatgttttagatg---tacaaaaat |
43559443 |
T |
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| Q |
508 |
agatacaagataaacatattaatgtaacaattaattgctgatgaacgatagaaacaattatacaataatactaggtgaacaaaatgatga |
597 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| |||| |
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| T |
43559444 |
agatacaagataaacatattaatgtaacaattaattgcagatgaacgatagaaacaattatacaataatacttgatgaacaaaatcatga |
43559533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 319 - 567
Target Start/End: Original strand, 43567950 - 43568199
Alignment:
| Q |
319 |
aaaccctagaggtattaatatcattgagattttggtttgtaatttgcagttggtagtaaattgaatgtaaattttaacacaatggttatttaattagcat |
418 |
Q |
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||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43567950 |
aaaccctagagatat-aatatcattgagattttggtttttaatttgcagttggtagtaaattgaatgtaaattttaacacaatggttatttaattagcat |
43568048 |
T |
|
| Q |
419 |
aagtaattattatta-ggttgcaaaatccatcatactttgc-aacaggatatgtcattccaaattagatgttttagatgtactacaaaaatagatacaag |
516 |
Q |
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| T |
43568049 |
aagtaattattacgagggatgcaagatccattatactttgcaaacaagacgtgtcattccaaattagatgttttagatgtactgcaaaaatagatacaag |
43568148 |
T |
|
| Q |
517 |
ataaacatattaatgtaacaattaattgctgatgaacgatagaaacaatta |
567 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
43568149 |
ataaacatattaatgtaacaattaattgcatatgagcgatagaaacaatta |
43568199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 199 - 302
Target Start/End: Original strand, 43567634 - 43567736
Alignment:
| Q |
199 |
actatctaactacctgcaaattgaacctttttcttggcattctttacttgtcccttctaaccagtcaagcttgtctgtgggtgttgacctgtcaaacaag |
298 |
Q |
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||||||||||||||| ||| |||||||||||| || || ||||| |||||||||||||||||||||||||||||| ||||||||||| || ||||||| |
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| T |
43567634 |
actatctaactaccttcaacttgaaccttttt-ttcgctttcttaacttgtcccttctaaccagtcaagcttgtcagtgggtgttgagttgccaaacaat |
43567732 |
T |
|
| Q |
299 |
atat |
302 |
Q |
| |
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|||| |
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| T |
43567733 |
atat |
43567736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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