View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21065_low_4 (Length: 391)

Name: NF21065_low_4
Description: NF21065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21065_low_4
NF21065_low_4
[»] chr4 (7 HSPs)
chr4 (19-391)||(27548939-27549311)
chr4 (100-388)||(27945401-27945701)
chr4 (100-388)||(27436909-27437209)
chr4 (156-281)||(26766356-26766481)
chr4 (23-103)||(27437247-27437327)
chr4 (19-74)||(27945763-27945818)
chr4 (41-103)||(27504035-27504097)


Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 27548939 - 27549311
Alignment:
Q  19 tcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcggtgcaagaaacagtgaggccaaccattggttcaagtatgagatg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27548939 tcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcggtgcaagaaatagtgaggccaaccattggttcaagtatgagatg 27549038  T
Q  119 gaaaacatactacagtcactgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcccctacaaatcttatag 218  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27549039 gaaaacatactacagtcagtgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcccctacaaatcttatag 27549138  T
Q  219 tatccattttctccccacgtctcgccccaggagtttttaacaatccaatacggcttctccttcgtataagctccagaaccgtaccccaccagcaaaactc 318  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27549139 tatccattttctccccacgtctcgccccaggagcttttaacaatccaatacggcttctccttcgtataagctccagaaccgtaccccaccagcaaaactc 27549238  T
Q  319 catgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgtatgtctgcatgtatgccgcatt 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27549239 catgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgtatgtctgcatgtatgccgcatt 27549311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 100 - 388
Target Start/End: Complemental strand, 27945701 - 27945401
Alignment:
Q  100 ttggttcaagtatgagatggaaaacatactacagtcactgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatatttcg 199  Q
    |||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27945701 ttggttcaagtatgagatggaaaacatactactgtcactgagtattagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcg 27945602  T
Q  200 tcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagtttttaacaatccaatacggcttctc------cttcgtat------aa 287  Q
    |||||| |||||||| |||||||| || |||||||| ||||| ||||| ||||||||||| |||||||||||||||||      |||| |||       |    
T  27945601 tcccctgcaaatcttgtagtatccgttctctccccaggtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcatatcagctcca 27945502  T
Q  288 gctccagaaccgtaccccaccagcaaaactccatgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgtatgtctgcatgtatgccg 387  Q
    ||||||||||| |||||||| |||||||||||| |||||||||||||||||||  |||||||||| ||||  |||||||||||||||||||||||| |||    
T  27945501 gctccagaaccataccccacaagcaaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccacgtatgtctgcatgtataccg 27945402  T
Q  388 c 388  Q
    |    
T  27945401 c 27945401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 100 - 388
Target Start/End: Complemental strand, 27437209 - 27436909
Alignment:
Q  100 ttggttcaagtatgagatggaaaacatactacagtcactgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatatttcg 199  Q
    ||||| || ||||||||| |||| |||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27437209 ttggtacatgtatgagatagaaatcatactactgtcactgagtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcg 27437110  T
Q  200 tcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagtttttaacaatccaatacggcttctc------cttcgtat------aa 287  Q
    ||| || |||||||| |||||||| || |||||||| ||||| ||||| ||||||||||| |||||||||||||||||      |||| |||       |    
T  27437109 tcctctgcaaatcttgtagtatccgttctctccccaggtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcatatcagctcca 27437010  T
Q  288 gctccagaaccgtaccccaccagcaaaactccatgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgtatgtctgcatgtatgccg 387  Q
    ||||||||||| |||||||| |||||||||||| |||||||||||||||||||  |||||||||| ||||  |||||||||||||||||||||||| |||    
T  27437009 gctccagaaccataccccacaagcaaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccacgtatgtctgcatgtataccg 27436910  T
Q  388 c 388  Q
    |    
T  27436909 c 27436909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 156 - 281
Target Start/End: Complemental strand, 26766481 - 26766356
Alignment:
Q  156 gcagccacagtagaaaccattgagtccactccacagatatttcgtcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagtttt 255  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||||||||||||||||||| ||||| ||||| |||||||    
T  26766481 gcagccacagtagaaaccatagagtccactccgcagatatttcgtcccctgcatattttatagtatccattttctccccaagtctcaccccatgagtttt 26766382  T
Q  256 taacaatccaatacggcttctccttc 281  Q
    |||  |||||||| ||||||||||||    
T  26766381 taattatccaatatggcttctccttc 26766356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 27437327 - 27437247
Alignment:
Q  23 acaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcggtgcaagaaacagtgaggccaaccattgg 103  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||  ||||||||||||||    
T  27437327 acaatagtgtgagctttacaagcgagacattatgtgctggaagacatcttcggtgcaaggaataggaaggccaaccattgg 27437247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 27945818 - 27945763
Alignment:
Q  19 tcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcg 74  Q
    ||||| |||||||||||||  ||||| ||||| |||||||||||||||||||||||    
T  27945818 tcctataatagtgtgagctcaacaagtgagacattatgtgctggaagacatcttcg 27945763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 27504097 - 27504035
Alignment:
Q  41 caagcgagacgttatgtgctggaagacatcttcggtgcaagaaacagtgaggccaaccattgg 103  Q
    ||||| ||| |||||||| |||||||||||||||||||||| ||  ||||||||| |||||||    
T  27504097 caagcaagaagttatgtgttggaagacatcttcggtgcaaggaatggtgaggccacccattgg 27504035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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