View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21065_low_5 (Length: 381)
Name: NF21065_low_5
Description: NF21065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21065_low_5 |
 | |
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| [»] scaffold0264 (1 HSPs) |
| | |
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| [»] scaffold0074 (1 HSPs) |
| | |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 20205922 - 20205577
Alignment:
| Q |
19 |
aggactgcatagttaaagcaaccaatcagctatcctcagcgtgctctttgtccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20205922 |
aggactgcatagttaaagcaaccaatcagctatcctcagcgtgctctttgtccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaa |
20205823 |
T |
|
| Q |
119 |
catatctttcttttccacgatcgatatgatgccaggttttcactggtgcaataccgccaatgtcacaaacacgaagagctttgtgtctttattgtttaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20205822 |
catatctttcttttccacgatcgatatgatgccaggttttcactggtgcaataccgccaatgtcacaaacacgaagagctttgtgtctttattgtttaca |
20205723 |
T |
|
| Q |
219 |
accatgaatcgaactgtagatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20205722 |
accatgaatcgaactgtagatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccc |
20205623 |
T |
|
| Q |
319 |
tttactgtctagctcagtgcacgccggatttgtcgcctaatgattg |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20205622 |
tttactgtctagctcagtgcacgccggatttgtcgcctaatgattg |
20205577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 22099945 - 22099600
Alignment:
| Q |
19 |
aggactgcatagttaaagcaaccaatcagctatcctcagcgtgctctttgtccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22099945 |
aggactgcatagttaaagcaaccaatcagctatcctcagcgtgctctttgtccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaa |
22099846 |
T |
|
| Q |
119 |
catatctttcttttccacgatcgatatgatgccaggttttcactggtgcaataccgccaatgtcacaaacacgaagagctttgtgtctttattgtttaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22099845 |
catatctttcttttccacgatcgatatgatgccaggttttcactggtgcaataccgccaatgtcacaaacacgaagagctttgtgtctttattgtttaca |
22099746 |
T |
|
| Q |
219 |
accatgaatcgaactgtagatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22099745 |
accatgaatcgaactgtagatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccc |
22099646 |
T |
|
| Q |
319 |
tttactgtctagctcagtgcacgccggatttgtcgcctaatgattg |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22099645 |
tttactgtctagctcagtgcacgccggatttgtcgcctaatgattg |
22099600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 364
Target Start/End: Complemental strand, 21972481 - 21972141
Alignment:
| Q |
21 |
gactgcatagttaaagcaaccaatcagctatcctcagcgtgctctttgtccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaaca |
120 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
21972481 |
gactgcatagttaaggcaaccaatcagctatcctcagagtgctctttgtccaaacaagctgtgatttggtacggcgagtgcatggttcgattctctgaca |
21972382 |
T |
|
| Q |
121 |
tatctttcttttccacgatcgatatgatgccaggttttcactggtgcaataccgccaatgtcacaaacacgaagagctttgtgtctttattgtttacaac |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
21972381 |
actctttcttttccacgatcgatatgatgccaggttttcactggtgcaataccgctgaaatcttaaacacgaaaagcttcgtgtctttattgttttcaac |
21972282 |
T |
|
| Q |
221 |
catgaatcgaactgtagatgaagcagcaagtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctt |
320 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| |||| ||||||||| ||| ||||||||||| |||||||||| || ||||||||||||||||||| |
|
|
| T |
21972281 |
catgaatcgaactgcagacgaagcagcaagtccgcttagtggtgacaagaac---aagtttgcaacaaaagaagcacgagtttcggaaaatcagaccctt |
21972185 |
T |
|
| Q |
321 |
tactgtctagctcagtgcacgccggatttgtcgcctaatgattg |
364 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21972184 |
tacagtctagctcagtgcacgctggatttgtcgcctaatgattg |
21972141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 352
Target Start/End: Complemental strand, 20086445 - 20086269
Alignment:
| Q |
176 |
caatgtcacaaacacgaagagctttgtgtctttattgtttacaaccatgaatcgaactgtagatgaagcagcaagtccacttattggtgacaaaaacgag |
275 |
Q |
| |
|
||||||| ||||||| | ||||| || ||||||||||| | || ||| || ||||| ||| ||||||||| ||||||||| | |||||| ||| || |
|
|
| T |
20086445 |
caatgtctcaaacacagaaagcttcatgcctttattgttttcgacgatggataaaactgcagaggaagcagcaggtccacttactactgacaacaacaag |
20086346 |
T |
|
| Q |
276 |
aagtttgcaaccaaagaagcacaagatt-cggaaaatcagaccctttactgtctagctcagtgcacgccggatttgtc |
352 |
Q |
| |
|
|||||||| || ||||||||| | |||| | ||| |||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
20086345 |
aagtttgccacaaaagaagca-aggatttctgaatctcagaccctttactgtctagctcagtgcacgccggacttgtc |
20086269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 352
Target Start/End: Original strand, 22204721 - 22204894
Alignment:
| Q |
176 |
caatgtcacaaacacgaagagctttgtgtctttattgtttacaaccatgaatcgaactgtagatgaagcagcaagtccacttattggtgacaaaaacgag |
275 |
Q |
| |
|
||||||| ||||||| | ||||| || ||||||||||| | || |||||| ||||| ||| ||||||||| ||||||||| || |||||| || | |
|
|
| T |
22204721 |
caatgtctcaaacacagaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcaggtccacttactgctgacaacaa---g |
22204817 |
T |
|
| Q |
276 |
aagtttgcaaccaaagaagcacaagatt-cggaaaatcagaccctttactgtctagctcagtgcacgccggatttgtc |
352 |
Q |
| |
|
|| ||||| || ||||||||| |||||| | ||| ||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
22204818 |
aaatttgccacaaaagaagca-aagatttctgaatctcagaccctttactgcctagctcagtgcacgccggacttgtc |
22204894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 20128259 - 20128192
Alignment:
| Q |
69 |
tccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaacatatctttcttttccac |
136 |
Q |
| |
|
||||||| |||||| |||||||||| |||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
20128259 |
tccaaacgagctgtcatttggtacgaggagtgcatggttcgatactccaacacctctttcttttccac |
20128192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 22204611 - 22204678
Alignment:
| Q |
69 |
tccaaacaagctgtgatttggtacggcgagtgcatggttcgatactctaacatatctttcttttccac |
136 |
Q |
| |
|
||||||| |||||| |||||||||| |||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
22204611 |
tccaaacgagctgtcatttggtacgaggagtgcatggttcgatactccaacacctctttcttttccac |
22204678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 174 - 358
Target Start/End: Complemental strand, 16396 - 16212
Alignment:
| Q |
174 |
gccaatgtcacaaacacgaagagctttgtgtctttattgtttacaaccatgaatcgaactgtagatgaagcagcaagtccacttattggtgacaaaaacg |
273 |
Q |
| |
|
||||| ||| |||||||||| ||||| || ||||||||||| ||||| | | ||||| ||||||||||||| ||||||||||||| |||| ||| |
|
|
| T |
16396 |
gccaacgtctcaaacacgaaaagcttcatgcctttattgttttcaacctggtacgaaactgcagatgaagcagcacgtccacttattggagacataaaaa |
16297 |
T |
|
| Q |
274 |
agaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaa |
358 |
Q |
| |
|
||||||||||||| |||||||||| || |||| ||||||||||||| ||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
16296 |
agaagtttgcaacaaaagaagcacgagtttcgaaaaatcagaccctatactgtctagctcagtgcacgccagacttgtctcctaa |
16212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 174 - 358
Target Start/End: Original strand, 47545 - 47729
Alignment:
| Q |
174 |
gccaatgtcacaaacacgaagagctttgtgtctttattgtttacaaccatgaatcgaactgtagatgaagcagcaagtccacttattggtgacaaaaacg |
273 |
Q |
| |
|
||||| ||| |||||||||| ||||| || ||||||||||| ||||| | | ||||| ||||||||||||| ||||||||||||| || | ||| |
|
|
| T |
47545 |
gccaacgtctcaaacacgaaaagcttcatgcctttattgttttcaaccgggtacgaaactgcagatgaagcagcacgtccacttattggagatataaaaa |
47644 |
T |
|
| Q |
274 |
agaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaa |
358 |
Q |
| |
|
||||||||||||| |||||||||| || |||| |||| |||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
47645 |
agaagtttgcaacaaaagaagcacgagtttcgaaaaaacagaccctttactgtctagctcagtgcacgccagacttgtctcctaa |
47729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 47634870 - 47634922
Alignment:
| Q |
60 |
tgctctttgtccaaacaagctgtgatttggtacggcgagtgcatggttcgata |
112 |
Q |
| |
|
||||| || |||||||||||||| || ||||||| |||||||||||||||||| |
|
|
| T |
47634870 |
tgctccttatccaaacaagctgtaatctggtacgacgagtgcatggttcgata |
47634922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 5199 - 5250
Alignment:
| Q |
307 |
aaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaa |
358 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
5199 |
aaaatcagaccctgtactgtctagaacagtgcacgccggacttgtcccctaa |
5250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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