View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21065_low_8 (Length: 314)
Name: NF21065_low_8
Description: NF21065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21065_low_8 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: scaffold0227 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 3927 - 3638
Alignment:
| Q |
9 |
gaagaaaatgttaagaccagacaaatgaaatttgaaactgtaagttggtaaatcagaaagctaacgaagggaatctccttccgtggttgaatatgggtgc |
108 |
Q |
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| T |
3927 |
gaagaaaatgttaggaccagacaaatgaaatttgaaactgtaagttggtaaatcagacagctaacgaagggaatctccttccgtggttgaatatgggtgc |
3828 |
T |
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| Q |
109 |
atatacttttactatttttccctgtaatatttactcttttgcttgaatttgcagttcacctatgactctgtccgagaagagggccaatcatggtgatcac |
208 |
Q |
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| T |
3827 |
atatacttttactatttttccctgtactatttactcttttgcttgaatttgcagttcacctatgactctgtccgagaagagggccaatcatggtgatcac |
3728 |
T |
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| Q |
209 |
attgatcgaatcagtgacttaccatgtaatgtcattgatagcatcctagaacgcttgaacattcaagagctagttagtaccagtcttctg |
298 |
Q |
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| T |
3727 |
attgatcgaatcagtgacttaccatgtaatgtcattgatggcatcctagaacgcttgaacattcaagagctagttagtaccagtcttctg |
3638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 131 - 284
Target Start/End: Original strand, 10862203 - 10862356
Alignment:
| Q |
131 |
tgtaatatttactcttttgcttgaatttgcagttcacctatgactctgtccgagaagagggccaatcatggtgatcacattgatcgaatcagtgacttac |
230 |
Q |
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| T |
10862203 |
tgtaatatttaatcttttgcttggagttgtagttcacctatgactctgtccaagaagaaggccaatcgccgtgatcgcgttgattgaattagtgacttac |
10862302 |
T |
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| Q |
231 |
catgtaatgtcattgatagcatcctagaacgcttgaacattcaagagctagtta |
284 |
Q |
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| T |
10862303 |
catgtaatgtcattgatggcatcctaaaacacttgagcatccaagagctagtta |
10862356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 137 - 268
Target Start/End: Complemental strand, 40011349 - 40011218
Alignment:
| Q |
137 |
atttactcttttgcttgaatttgcagttcacctatgactctgtccgagaagagggccaatcatggtgatcacattgatcgaatcagtgacttaccatgta |
236 |
Q |
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| T |
40011349 |
atttactcttttgcttgaatttgtagttcactgatgactctgttcacgaagaaggccaattgcggtgatcacattgatcgaatcagtgacttaccaagta |
40011250 |
T |
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| Q |
237 |
atgtcattgatagcatcctagaacgcttgaac |
268 |
Q |
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| T |
40011249 |
atgtcatcgatggcatcctagaacacttgaac |
40011218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 135 - 297
Target Start/End: Original strand, 16865269 - 16865431
Alignment:
| Q |
135 |
atatttactcttttgcttgaatttgcagttcacctatgactctgtccgagaagagggccaatcatggtgatcacattgatcgaatcagtgacttaccatg |
234 |
Q |
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| T |
16865269 |
atatttactcttttgcttgaatttgtagttcacttatgactctgtctaacaagaaggccaattacggtgatcaccttgatcgaatcagtgacttaccaag |
16865368 |
T |
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| Q |
235 |
taatgtcattgatagcatcctagaacgcttgaacattcaagagctagttagtaccagtcttct |
297 |
Q |
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| T |
16865369 |
taatgtcattgatggcattctacaacacctgaacatccgagacctagctaggaccagtattct |
16865431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 147 - 285
Target Start/End: Complemental strand, 35749406 - 35749271
Alignment:
| Q |
147 |
ttgcttgaatttgcagttcacctatgactctgtccgagaagagggccaatcatggtgatcacattgatcgaatcagtgacttaccatgtaatgtcattga |
246 |
Q |
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| T |
35749406 |
ttgcttgaatttgtagttaccttatgactctgtctaacaagaaggccaatcatg---atcacattgatcgaatcagtgacttaccatgtaatgttattga |
35749310 |
T |
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| Q |
247 |
tagcatcctagaacgcttgaacattcaagagctagttag |
285 |
Q |
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| T |
35749309 |
tgatatcctagcacgcttgtacatcaaagacctagttag |
35749271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 35742991 - 35742939
Alignment:
| Q |
203 |
gatcacattgatcgaatcagtgacttaccatgtaatgtcattgatagcatcct |
255 |
Q |
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| T |
35742991 |
gatcaaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcct |
35742939 |
T |
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