View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21066_low_1 (Length: 248)
Name: NF21066_low_1
Description: NF21066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21066_low_1 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 46245293 - 46245074
Alignment:
| Q |
29 |
agaggtcgtggcggcaactggggtgggaacaaatggtgaagcctacgttttgttcaatatgggaacataactgcatgatgcttcaatggagatgactagt |
128 |
Q |
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| T |
46245293 |
agaggtcgtggcggcaactggggtgggaacaaatggtgaagcctacgttttgttcaatatgggaacataactgcatgatgcttcaatggagatgactagt |
46245194 |
T |
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| Q |
129 |
tcagtatgatgaagctgacaggaatgttcactttgttcaatgtgagagctttaactacataaggcttggtcatggctgaacttcattgactttggaggat |
228 |
Q |
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| T |
46245193 |
tcagtatgatgaagctgacaggaatgttcactttgttcaatgtgagagctttaactacacaaggcttggtcatggctgaacttcattgactttggaggat |
46245094 |
T |
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| Q |
229 |
tcaagttgagatgagctgaa |
248 |
Q |
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| T |
46245093 |
tcaagttgagatgagctgaa |
46245074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 43 - 248
Target Start/End: Original strand, 46161974 - 46162181
Alignment:
| Q |
43 |
caactggggtgggaacaaatggtgaagcctacgttttgttcaatat----gggaacataactgcatgatgcttcaatggagatgactagttcagtatgat |
138 |
Q |
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| T |
46161974 |
caactggggtgggaacaaatggcgaagcctactttttgttcaatatatatgggaacataactgcatgttgctttaatggagatgactagttcagtatgat |
46162073 |
T |
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| Q |
139 |
gaagctgacaggaatgttca-ctttgttcaatgtgagagctttaactacataaggcttggtcatggctgaacttcattgactttggaggattcaagttga |
237 |
Q |
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| T |
46162074 |
gaagctgacaggaatgttgacctttgttcaa--tgagagctttaactacacgaggtttggttgt-tctgaacttcattgactttggaggattcaagttca |
46162170 |
T |
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| Q |
238 |
gatgagctgaa |
248 |
Q |
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| T |
46162171 |
tatgagttgaa |
46162181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 46254981 - 46254839
Alignment:
| Q |
29 |
agaggtcgtggcggcaactggggtgggaacaaatggtgaagcctacgttttgttcaatatgggaacataactgcatgatgcttcaatggagatgactagt |
128 |
Q |
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||||||||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46254981 |
agaggtcgtgggggcaactgggttgggaacatttggtgaagcctactatttgttcaatatgggaacatagctgcatgatgcttcaatggagatgactagt |
46254882 |
T |
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| Q |
129 |
tcagtatgatgaagctgacaggaatgttca-ctttgttcaatg |
170 |
Q |
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| T |
46254881 |
tcagtacgatgaagctgacaagaatgttaacctttgttcaatg |
46254839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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