View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21067_high_2 (Length: 293)
Name: NF21067_high_2
Description: NF21067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21067_high_2 |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 27659369 - 27659636
Alignment:
| Q |
17 |
ttttctggtatgctgtttgtgtttatatatgaacaaagtccatgcttaaattatatttaatgtttttgtttgtgatgcttacatttt-ttctgatgtttt |
115 |
Q |
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| T |
27659369 |
ttttctggtatgctgtttgtgtttatat--gaacaaagtccttgcttaaattatatttaatgtttttgtttgtgatgcttacatttttttctgatgtttt |
27659466 |
T |
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| Q |
116 |
tgctgcattatatttgatgcaataagcttgtaaatcactatgtttgcaatataacttattattgatctaattgagtgattttgtgcagttttggtgtgcc |
215 |
Q |
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| T |
27659467 |
agctgcattatatttgatgcaataagcttgtaaatcaccatgtttgcaatataacttattattgatctaattgagtgattttgtgcagttttggtgtgcc |
27659566 |
T |
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| Q |
216 |
aattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
285 |
Q |
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| T |
27659567 |
aattgcacccacaattgaaaatttgtggatagttcaaatgctgttttggattgtggtagtattgatgatg |
27659636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 37604706 - 37604440
Alignment:
| Q |
17 |
ttttctggtatgctgtttgtgtttatatatgaacaaagtccatgcttaaattatatttaatgtttttgtttgtgatgcttacattttttctgatgttttt |
116 |
Q |
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| T |
37604706 |
ttttttggtatgctgtttgtgtttatat--gaacaaagttcatgcttaaattatatttaatgtttttgtttgtgatgcttacgttgtttctgatgttttt |
37604609 |
T |
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| Q |
117 |
gctgcattatatttgatgcaataagcttgtaaatcactatgtttgcaatataacttattattgatctaattgagtgattttgtgcagttttggtgtgcca |
216 |
Q |
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| T |
37604608 |
gctacattatatttgatgcaataagcttgtaaatcactatgtttgcaatataacttattattgatctaattaagtaattttgtgcagttttggtgtgcca |
37604509 |
T |
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| Q |
217 |
attgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
285 |
Q |
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| T |
37604508 |
atttcacccacaattgaaaatttatggatagttcaaatgttcttgtggattgtggtagtattgatgatg |
37604440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 38776612 - 38776697
Alignment:
| Q |
125 |
atatttgatgcaataagcttgtaaatcactatgtttgcaatataacttattattgatctaattgagtgattttgtgcagttttggt |
210 |
Q |
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| T |
38776612 |
atattcgatgaaataagcttgtaaatctctatgtttgcaacataacttattatagatcttattgacttcttttgtgcagttttggt |
38776697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 285
Target Start/End: Original strand, 5743129 - 5743228
Alignment:
| Q |
186 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
285 |
Q |
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| T |
5743129 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggatggtccaaatgcttttgtggattgtggtagtattcatgatg |
5743228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 285
Target Start/End: Complemental strand, 33360423 - 33360324
Alignment:
| Q |
186 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
285 |
Q |
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| T |
33360423 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
33360324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 285
Target Start/End: Complemental strand, 670 - 571
Alignment:
| Q |
186 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
285 |
Q |
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| T |
670 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 285
Target Start/End: Complemental strand, 18084699 - 18084600
Alignment:
| Q |
186 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
285 |
Q |
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| T |
18084699 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
18084600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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