View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21067_low_2 (Length: 322)

Name: NF21067_low_2
Description: NF21067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21067_low_2
NF21067_low_2
[»] chr6 (1 HSPs)
chr6 (210-304)||(26854625-26854719)
[»] chr7 (3 HSPs)
chr7 (210-304)||(9962668-9962762)
chr7 (214-304)||(15845456-15845543)
chr7 (214-304)||(15854666-15854753)


Alignment Details
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 26854625 - 26854719
Alignment:
Q  210 attatgttcaacattctcattacctttaccttgactcccaacaaaattcggataggttttatcatcattcaaattcacatccgtagaaccataat 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26854625 attatgttcaacattctcattacctttaccttgactcccaacaaaattcggataggttttatcatcattcaaattcacatccgtagaaccataat 26854719  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 9962668 - 9962762
Alignment:
Q  210 attatgttcaacattctcattacctttaccttgactcccaacaaaattcggataggttttatcatcattcaaattcacatccgtagaaccataat 304  Q
    ||||||||||||||||||| ||  |||||||||||| |||||||    |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  9962668 attatgttcaacattctcagtagatttaccttgactaccaacaatcaccggataggttttatcatcattcaaatccacatccgtagaaccgtaat 9962762  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 304
Target Start/End: Original strand, 15845456 - 15845543
Alignment:
Q  214 tgttcaacattctcattacctttaccttgactcccaacaaaattcggataggttttatcatcattcaaattcacatccgtagaaccataat 304  Q
    ||||||||||||||| ||  ||||||||||||||| ||||   ||||| |||||   || ||| |||||| ||||||||||||||| ||||    
T  15845456 tgttcaacattctcaatagatttaccttgactcccgacaatcatcggagaggtt---tcgtcactcaaatccacatccgtagaaccgtaat 15845543  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 304
Target Start/End: Original strand, 15854666 - 15854753
Alignment:
Q  214 tgttcaacattctcattacctttaccttgactcccaacaaaattcggataggttttatcatcattcaaattcacatccgtagaaccataat 304  Q
    ||||||||||||||| ||  ||||||||||||||| ||||   ||||| |||||   || ||| |||||| ||||||||||||||| ||||    
T  15854666 tgttcaacattctcaatagatttaccttgactcccgacaatcatcggagaggtt---tcgtcactcaaatccacatccgtagaaccgtaat 15854753  T

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