View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_high_1 (Length: 824)
Name: NF21068_high_1
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 5e-89; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 57 - 255
Target Start/End: Complemental strand, 13118868 - 13118670
Alignment:
| Q |
57 |
tcgaagtccaacatcagcatgcaaaccagctgcagcagagacagataaatgagccctttgctaattcaaccgtatctgttgaagatgaagacttgtgtta |
156 |
Q |
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| T |
13118868 |
tcgaagtccaacatcagcatgcaaagcagctgcagcagagacagataaatgagccctttgctaattcaaccgtatctgttgaagaggaagacttgtgtta |
13118769 |
T |
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| Q |
157 |
ctcttttgaacctgagttgcaatatcttaatttcttttgaggaggttgcactatcttaatgatagtcctatacttttagtttgtactaaaaaatgattg |
255 |
Q |
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| T |
13118768 |
ctcatgcgaacctgagttgaaatatcttaatttcttttgaggaggttgcactatcttaatgacagtcctatacttttagtttgcactaaaaaatgattg |
13118670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 585 - 789
Target Start/End: Complemental strand, 13118371 - 13118169
Alignment:
| Q |
585 |
acaattagcaatgcatcataagcaatgaactacttcaaatttattgattgtagtcccctgattacggtgaacctagcatagtttttattagacctttgca |
684 |
Q |
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| T |
13118371 |
acaattagcaatgcatcataagcaatgaactatttcaaatttattcattgtaatcctcc-attaccatgaacacagcatagtttttactagacctt-gca |
13118274 |
T |
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| Q |
685 |
tatg-aaatatgattgatatttctgaacaatcagagtttggaggatatagtgcatatgggaaatgctgaaactgaatcatccgatgggaaaccatcaatt |
783 |
Q |
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| T |
13118273 |
aacggaaatatgattgatatttctgaacaatcagagttag-aggatatagtgcatatgggaaatgctgaaactgaaacatccaatgggaaaccatcagtt |
13118175 |
T |
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| Q |
784 |
gaagct |
789 |
Q |
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| T |
13118174 |
gtagct |
13118169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 433 - 530
Target Start/End: Complemental strand, 13118499 - 13118402
Alignment:
| Q |
433 |
gttctgcgaagaccccaaatctgcaagttggaatgttgtatgagccaagtgtatggatttagattcttcgattttgaagtcttcacagttatctgtct |
530 |
Q |
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| T |
13118499 |
gttctgggaagagcccaaatcttcaagttggattgttgtatgagctaagtgtatggatttagattctttgattttgaagtcttcacacttatttgtct |
13118402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 13118934 - 13118995
Alignment:
| Q |
1 |
ctgcgccatgcacagcaccctcgaagtgtgacctctgagctccgccatcctcaccatcgaag |
62 |
Q |
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| T |
13118934 |
ctgcgccatgcacagcaccctcgaagtgtgacctctgagctccgccatcctcaccatcgaag |
13118995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 597 - 780
Target Start/End: Complemental strand, 43532132 - 43531950
Alignment:
| Q |
597 |
gcatcataagcaatgaactacttcaaatttattgattgtagtcccctgattacggtgaacctagcatagtttttattagacctttgcatatg-aaatatg |
695 |
Q |
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| T |
43532132 |
gcatcagaagcaatggactacttcaaacttatagggtgcaatcctctcattaccatgaacccagcagagtttttattagacctt-gcaaatggaaacatg |
43532034 |
T |
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| Q |
696 |
attgatatttctgaacaatcagagtttggaggatatagtgcatatgggaaatgctgaaactgaatcatccgatgggaaaccatca |
780 |
Q |
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| T |
43532033 |
attgatatttctgtaccatcagagttaa-atgataaagtgcatatgggaaatgctgaaactgaaacttttaatgggaaaccatca |
43531950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 466 - 538
Target Start/End: Complemental strand, 43525892 - 43525820
Alignment:
| Q |
466 |
tgttgtatgagccaagtgtatggatttagattcttcgattttgaagtcttcacagttatctgtctttaggtta |
538 |
Q |
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| T |
43525892 |
tgttgtatgagtcaagtgcatggatttagattctctgcttttgaagtcttcacatttatctgtctttaggtta |
43525820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 104 - 255
Target Start/End: Complemental strand, 43526283 - 43526131
Alignment:
| Q |
104 |
aatgagccctttgctaatt-caaccgtatctgttgaagatgaagacttgtgttactcttttgaacctgagttgcaatatctta--atttcttttgaggag |
200 |
Q |
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||||||||||||||||||| || |||||| ||||||||||| |||||||||||||| | |||||||| |||| |||||| |||| |||| ||| |
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| T |
43526283 |
aatgagccctttgctaatttcacccgtattcgttgaagatgatgacttgtgttactcatgcaaacctgagccgcaacatcttagtatttttttt---gag |
43526187 |
T |
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| Q |
201 |
gttgcactatcttaatgatagtcctatacttttag-tttgtactaaaaaatgattg |
255 |
Q |
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| T |
43526186 |
gttgcaatatcttgaagatagtcctatactcttagttttgtactaaaaaaagattg |
43526131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 16695111 - 16695148
Alignment:
| Q |
121 |
ttcaaccgtatctgttgaagatgaagacttgtgttact |
158 |
Q |
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| T |
16695111 |
ttcaaccgtatccgttgaagatgaagacttgtgttact |
16695148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 17669347 - 17669384
Alignment:
| Q |
121 |
ttcaaccgtatctgttgaagatgaagacttgtgttact |
158 |
Q |
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| T |
17669347 |
ttcaaccgtatccgttgaagatgaagacttgtgttact |
17669384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 309
Target Start/End: Complemental strand, 13118646 - 13118611
Alignment:
| Q |
274 |
acccgttctagtttttgtaggtagtagacagatgta |
309 |
Q |
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| T |
13118646 |
acccgttctagtttttgtaggtagtacacagatgta |
13118611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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