View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_high_20 (Length: 240)
Name: NF21068_high_20
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 54479593 - 54479388
Alignment:
| Q |
13 |
agtagcaaagggtctgggatgatcaagttgtttgcaagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtg |
112 |
Q |
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| T |
54479593 |
agtatcaaagggtctgggatgatcaagttgtttgca-gagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtg |
54479495 |
T |
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| Q |
113 |
tttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattacc |
212 |
Q |
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| T |
54479494 |
tttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattacc |
54479395 |
T |
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| Q |
213 |
ggcttca |
219 |
Q |
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||||||| |
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| T |
54479394 |
ggcttca |
54479388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 219
Target Start/End: Original strand, 25044311 - 25044496
Alignment:
| Q |
33 |
gatcaagttgtttgcaagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagct |
132 |
Q |
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| T |
25044311 |
gatcaagttgtttgcat-agttcaagataagttaaataaagaaccctatttttggcacctgttctatgatggttgttatacttgcaaaaatacttcaatt |
25044409 |
T |
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| Q |
133 |
gtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttca |
219 |
Q |
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| T |
25044410 |
gtttaagattgcaacaacccagcatttgtcccaacagcagaaacaaccaattgatattcttcttcttctcggcaattatcggcttca |
25044496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 25040598 - 25040630
Alignment:
| Q |
59 |
ataagttaaataaagaactctattcttggcacc |
91 |
Q |
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| T |
25040598 |
ataagtcaaataaagaactctattcttggcacc |
25040630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 219
Target Start/End: Original strand, 10124187 - 10124372
Alignment:
| Q |
33 |
gatcaagttgtttgcaagagtccaagataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagct |
132 |
Q |
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| T |
10124187 |
gatcaagttgtttgcaa-agttcaagataagttaaataaagaaccctattcttggcaccggttcgatgatggctattatacttgcaaaaatatttcaatt |
10124285 |
T |
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| Q |
133 |
gtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttca |
219 |
Q |
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| T |
10124286 |
gttcaagcttacaacaaccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggtttca |
10124372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 219
Target Start/End: Original strand, 28649786 - 28649973
Alignment:
| Q |
31 |
atgatcaagttgtttgcaagagtccaagataagttaaataaagaactcta-ttcttggcacctgattcatgattcttggtgtgtttgcagaaatacttca |
129 |
Q |
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| T |
28649786 |
atgatcaagttatttgcat-agttcaagataagttaaataaagaactctattttttggca-ttgttctatgatggttgttatacttgcaaaaatacttca |
28649883 |
T |
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| Q |
130 |
gctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttca |
219 |
Q |
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| T |
28649884 |
attgtttaagattgcaacaaccaagcatttgtcccaacaacaaaaacaaccaattaatattctttttcttctcagcaattatcggcttca |
28649973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 219
Target Start/End: Complemental strand, 21393244 - 21393084
Alignment:
| Q |
59 |
ataagttaaataaagaactctattcttggcacctgattcatgattcttggtgtgtttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatt |
158 |
Q |
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|||||| |||||||||||||||||||||||||| | | ||||| ||| ||| ||||| |||||||||| |||| | || |||| || || |||||| |
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| T |
21393244 |
ataagtcaaataaagaactctattcttggcaccggttcgatgatgattgttgtacttgcaaaaatacttcaattgttcaagcttgcaacaaccgagcatt |
21393145 |
T |
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| Q |
159 |
tgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttca |
219 |
Q |
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| T |
21393144 |
tgtcccagcaatagaaacaaccaattgatattctttttcttctcggcaattaccggtttca |
21393084 |
T |
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