View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_high_22 (Length: 239)
Name: NF21068_high_22
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 19469720 - 19469930
Alignment:
| Q |
10 |
tgagatgaagatggacatgttttagcaacaacaacctggaagagggatgactatgttcaaccagaagaagcttagggttatgctttgtataagactatga |
109 |
Q |
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| T |
19469720 |
tgagatgaagatggacatgttttagcaacaacaacctggaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtataagactatga |
19469819 |
T |
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| Q |
110 |
ttttggtcaaggactgctgttttcgcatagtgggatttgagtgataatgaagggttactgaagaagatcatcagtgctggagaagaacctggaacttatc |
209 |
Q |
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| T |
19469820 |
ttttggtcaaggactgctgttttcgcacagtggaatttcagtgataatgaagggttagtgaagaagatcattagtgctgctgaagaacctggaacttatc |
19469919 |
T |
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| Q |
210 |
tagggaatatt |
220 |
Q |
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||| ||||||| |
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| T |
19469920 |
tagagaatatt |
19469930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 47865596 - 47865388
Alignment:
| Q |
12 |
agatgaagatggacatgttttagcaacaacaacctggaagagggatgactatgttcaaccagaagaagcttagggttatgctttgtataagactatgatt |
111 |
Q |
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| T |
47865596 |
agatgaagatggacatgttttagcaacgacaacctgaaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtacaagactatgatt |
47865497 |
T |
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| Q |
112 |
ttggtcaaggactgctgttttcgcatagtgggatttgagtgataatgaagggttactgaagaagatcatcagtgctggagaagaacctggaacttatcta |
211 |
Q |
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| T |
47865496 |
ttggtcaaggactgctgttttcgcacagtggagtttgagtgataatgaagggttagtgaagaagatcattagtgctggtgaagaacctggaacttatcta |
47865397 |
T |
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| Q |
212 |
gggaatatt |
220 |
Q |
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| T |
47865396 |
gggaatatt |
47865388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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