View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_high_34 (Length: 201)
Name: NF21068_high_34
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 39733440 - 39733625
Alignment:
| Q |
1 |
ccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaagcataaacaacttcacctttgaattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733440 |
ccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaagcataaacaacttcacctttgaattc |
39733539 |
T |
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| Q |
101 |
agaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatatactcaacttcat |
186 |
Q |
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| T |
39733540 |
agaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatatactcaacttcat |
39733625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 39839518 - 39839333
Alignment:
| Q |
1 |
ccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaagcataaacaacttcacctttgaattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839518 |
ccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaagcataaacaacttcacctttgaattc |
39839419 |
T |
|
| Q |
101 |
agaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatatactcaacttcat |
186 |
Q |
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| T |
39839418 |
agaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatatactcaacttcat |
39839333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 31290504 - 31290472
Alignment:
| Q |
148 |
tagcaacaacaagccacctacaaatatactcaa |
180 |
Q |
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| T |
31290504 |
tagcaacaacaagccacctacaaatattctcaa |
31290472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 29857497 - 29857685
Alignment:
| Q |
1 |
ccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaagcataaacaacttcacctttgaattc |
100 |
Q |
| |
|
||||||||||||| ||||| |||||||| | ||||||||| ||| |||| ||| ||||| || ||||||||||||| || || |||||| |||||||| |
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| T |
29857497 |
ccattccagaattaccacaaccaacaaccaaaactttcttccctctaaaactttcacctgatttataatcacaagcatgaataatttcacccttgaattc |
29857596 |
T |
|
| Q |
101 |
agaaagt---ccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatatactcaacttcat |
186 |
Q |
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| | | |||||||| | ||| ||||||||| ||||| || || |||||||| |||||| |||||||||||||||||||||||| |
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| T |
29857597 |
accacctaacccttcaatataaggcacaacacactctgcattctcaccagtagcaaccacaagcgacctacaaatatactcaacttcat |
29857685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 17408021 - 17407974
Alignment:
| Q |
138 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
185 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17408021 |
ttttcaccggtagcaaccacaagccacctacaaatatactcaacttca |
17407974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 17408158 - 17408116
Alignment:
| Q |
1 |
ccattccagaatttccacatccaacaacaagaactttctttcc |
43 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| || ||||| |
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| T |
17408158 |
ccatgccagaatttccacatccaacaacaagaacattttttcc |
17408116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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