View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21068_high_6 (Length: 449)
Name: NF21068_high_6
Description: NF21068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21068_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 66 - 436
Target Start/End: Complemental strand, 41735301 - 41734928
Alignment:
| Q |
66 |
ccttagccgactccttgaaattgaataccaatgtgacgatctataccgaaagtgtacactaaacaatgtaacaacaatagttcaatatatttaaatgacc |
165 |
Q |
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| T |
41735301 |
ccttagccgactccttgaaattgaataccaatgtgacgatctataccgaaagtgtacactaaacaatgtaacaacaatagttcaatatatttaaatgacc |
41735202 |
T |
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| Q |
166 |
gatttacaatggttctcgacatcaatttaattgcgaaaatgtcttttatcttgtaattcccatttttcactagtgatgggcgatagtcatatattcttca |
265 |
Q |
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| T |
41735201 |
gatttacaatggttctcgacatcaatttaattgcgaaaatgtcttttatcttgtaattcccattttgcactagtgatgggcgatagtcatatattcttca |
41735102 |
T |
|
| Q |
266 |
caccaattcaatatatagttggccta---atcagattggtaatctaccatatgccaaccttggtagagtatttatacacttttaccatccatcttgacat |
362 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41735101 |
caccaattcaatatatagttggcctaatgatcagattggtaatctaccatatgccaaccttggtagagtatttatacacttttaccatccatcttgacat |
41735002 |
T |
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| Q |
363 |
caccaattcaatctgccactgatcataatatgatgaagcaaaatctattagtgaaaataatcactcttctccct |
436 |
Q |
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| T |
41735001 |
caccaattcaatctgccactgatcataatatgatgaagcaaaatctattagtgaaaataatcactcttctccct |
41734928 |
T |
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